Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F12
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 62 2e-10
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 62 2e-10
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 62 2e-10
AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical ... 28 3.2
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 27 4.2
U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical pr... 27 4.2
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 27 4.2
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 27 5.5
AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical ... 27 5.5
U41557-8|AAA83308.2| 229|Caenorhabditis elegans Hypothetical pr... 27 7.3
U41557-7|AAQ01534.1| 381|Caenorhabditis elegans Hypothetical pr... 27 7.3
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 27 7.3
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr... 26 9.7
Z70206-3|CAA94123.1| 176|Caenorhabditis elegans Hypothetical pr... 26 9.7
U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine rece... 26 9.7
U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical pr... 26 9.7
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 26 9.7
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha... 26 9.7
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 61.7 bits (143), Expect = 2e-10
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = +2
Query: 32 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCA 202
R +P + R +H G+ H G K +++ ++ WP +R RTC C CA
Sbjct: 1543 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1602
Query: 203 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 376
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1603 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1659
Query: 377 IKAETVAKAFIRDW 418
KAETV KAF+ W
Sbjct: 1660 KKAETVLKAFVERW 1673
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 61.7 bits (143), Expect = 2e-10
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = +2
Query: 32 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCA 202
R +P + R +H G+ H G K +++ ++ WP +R RTC C CA
Sbjct: 1446 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1505
Query: 203 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 376
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1506 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1562
Query: 377 IKAETVAKAFIRDW 418
KAETV KAF+ W
Sbjct: 1563 KKAETVLKAFVERW 1576
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 61.7 bits (143), Expect = 2e-10
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Frame = +2
Query: 32 RLYLPSEFRRQAFDTIH-GL--NHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDCHCA 202
R +P + R +H G+ H G K +++ ++ WP +R RTC C CA
Sbjct: 1457 RSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRKFYWPQMRVCVENCVRTCAKCLCA 1516
Query: 203 KVTRHTKSPVHAFTPPTSRF--SHVHVDIIGPLPISNGFKYCLTAVDRFTRWPEVIALED 376
H+K + TP F V D++ G +Y LT +D FT++ + + D
Sbjct: 1517 N--DHSKL-TSSLTPYRMTFPLEIVACDLMDVGLSVQGNRYILTIIDLFTKYGTAVPIPD 1573
Query: 377 IKAETVAKAFIRDW 418
KAETV KAF+ W
Sbjct: 1574 KKAETVLKAFVERW 1587
>AF077539-3|AAC26291.1| 310|Caenorhabditis elegans Hypothetical
protein T25D3.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 221 KSPVHAFTPPTSRFSH 268
K+PVH + PPTSRF+H
Sbjct: 61 KTPVH-YRPPTSRFAH 75
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 176 RTCVDCHC--AKVTR--HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 307
R+CV C AK + H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>U88179-1|AAB52661.3| 216|Caenorhabditis elegans Hypothetical
protein R57.2 protein.
Length = 216
Score = 27.5 bits (58), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 190 LSLCKSYTPHEVASACIYTTNEQI 261
LS C+ Y P E C+Y T++ +
Sbjct: 102 LSCCQLYVPEECHHMCVYETDQSV 125
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 27.5 bits (58), Expect = 4.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +2
Query: 176 RTCVDCHC--AKVTR--HTKSPVHAFTPPTSRFSHVHVDIIGPLPISN 307
R+CV C AK + H K T P++ F HV +D +GP+ N
Sbjct: 1768 RSCVVCQKVNAKPFKYPHAKILPGCRTEPSTPFQHVGLDYLGPIAYKN 1815
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 78 IVSKACRRNSEGKYKRGDVPDVSPSC 1
I++K C R S KYK G+ S SC
Sbjct: 1174 IITKPCHRESCPKYKLGEWSQCSVSC 1199
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 78 IVSKACRRNSEGKYKRGDVPDVSPSC 1
I++K C R S KYK G+ S SC
Sbjct: 1174 IITKPCHRESCPKYKLGEWSQCSVSC 1199
>AF039048-7|AAB94234.2| 688|Caenorhabditis elegans Hypothetical
protein F16B4.3 protein.
Length = 688
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 328 CQAILETIRNR*WSNNIDMYMRKSARWWCKCMHWRLR 218
C+ IL T+RN S N+D ++ R+ K ++ R
Sbjct: 157 CERILSTMRNFAGSENLDSFLTSFVRYVAKSPNFSFR 193
>U41557-8|AAA83308.2| 229|Caenorhabditis elegans Hypothetical
protein C50F7.1a protein.
Length = 229
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 301 FEWFQVLLDSSRPVHTLA*SHSFRR 375
F+W +L S P+ +A SH +RR
Sbjct: 136 FQWMSLLSSSLNPIIYIAYSHKYRR 160
>U41557-7|AAQ01534.1| 381|Caenorhabditis elegans Hypothetical
protein C50F7.1b protein.
Length = 381
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 301 FEWFQVLLDSSRPVHTLA*SHSFRR 375
F+W +L S P+ +A SH +RR
Sbjct: 288 FQWMSLLSSSLNPIIYIAYSHKYRR 312
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 26.6 bits (56), Expect = 7.3
Identities = 10/46 (21%), Positives = 21/46 (45%)
Frame = -3
Query: 187 NTSTSPKSAVFTYIGPYIPCCYQLDCSFSSRMIESMDCIKGLSSKL 50
N P + GP +P C +DC ++ + + ++ L +K+
Sbjct: 215 NAMNIPTTPCHKSAGPKVPACGAIDCPTNAHQLVDISKVEHLGTKV 260
>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
protein T25G3.2 protein.
Length = 1322
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 420 IQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQY 316
I SLM+ TVS L+S+ + +++N S VK +
Sbjct: 271 IVSLMRIVCTVSVLVSAVYINDHKKLNSSHFVKAF 305
>Z70206-3|CAA94123.1| 176|Caenorhabditis elegans Hypothetical
protein C49F8.3 protein.
Length = 176
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 193 SLCKSYTPHEVASACIYTTN 252
S C + P E S CIY TN
Sbjct: 54 SCCSRFVPPECRSLCIYETN 73
>U55363-1|AAK71420.1| 340|Caenorhabditis elegans Serpentine
receptor, class h protein30 protein.
Length = 340
Score = 26.2 bits (55), Expect = 9.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +2
Query: 77 IHGLNHPGAKTTIKLITARYVWPNIRKDCRLWTRTCVDC--HCAKVTRHTKSPV 232
I GL H GA TT+ + + + + K LW CV C H + HT S +
Sbjct: 286 IFGLCH-GAATTLVHLLSNKPFRSTMKAQLLWVINCVTCSRHSSSNKVHTLSSI 338
>U40936-1|AAL65777.2| 770|Caenorhabditis elegans Hypothetical
protein C13E3.1 protein.
Length = 770
Score = 26.2 bits (55), Expect = 9.7
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +2
Query: 53 FRRQAFDTIHGLNHPGAKTTIKLITARYV-WPNIRKDCRLWTRTCVDCHCAKVTRHTKSP 229
FR + +TI I +++V W N KD L T + HC K+T + P
Sbjct: 257 FRTETLETIQKKKMRKLGWIDSNIESKHVLWWNNAKD-ELLTARAIANHCVKITGDSSEP 315
Query: 230 VHAFTPPTSRFSH 268
F +F +
Sbjct: 316 FATFEEYLGKFEN 328
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 71 DTIHGLNHPGAKTTIKLITARYVWP 145
+ +H L H G KT +K +YV P
Sbjct: 185 ERLHDLRHSGNKTELKNFRTKYVLP 209
>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
1 protein.
Length = 1322
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 420 IQSLMKAFATVSALISSKAMTSGQRVNRSTAVKQY 316
I SLM+ TVS L+S+ + +++N S VK +
Sbjct: 271 IVSLMRIVCTVSVLVSAVYINDHKKLNSSHFVKAF 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,682,364
Number of Sequences: 27780
Number of extensions: 209574
Number of successful extensions: 617
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -