Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F11
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    25   1.8  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    23   5.4  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    23   7.2  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    22   9.5  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    22   9.5  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 174 SAPSCWRLSRCNTYSSGRLVSIGLPSSR 91
           SAPS   + R NT S  R +S+ LPSS+
Sbjct: 43  SAPSTPAIRRNNTDSFERGLSLPLPSSK 70


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 110 LACHHLGRHEHGSYCSVTRSAW 45
           +A H L + E+G+Y S   +AW
Sbjct: 420 VAFHFLPKDENGNYTSGQSNAW 441


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 102 AGQSKLVYQMNKYYNERV 155
           AG  +  YQ+N+Y NE V
Sbjct: 36  AGNDEGAYQVNRYTNEPV 53


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = -2

Query: 221 EDILNYKTNFMYGFC 177
           +D+L+++ +  YGFC
Sbjct: 216 DDLLHFRPSSTYGFC 230


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
            Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 158  GDSLVVILIHLVD*FRLACHH 96
            GD  V  +++LV  FR  C+H
Sbjct: 1120 GDDTVASIMNLVMQFRKVCNH 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 891,827
Number of Sequences: 5004
Number of extensions: 14194
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)