Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F11
(231 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0831 - 28035794-28036447 27 2.8
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883... 25 6.5
02_01_0794 - 5955763-5957238 25 6.5
01_06_0216 + 27618116-27618548,27618960-27619042,27619169-276192... 25 6.5
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 25 8.6
07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448 25 8.6
07_01_1162 - 11002193-11002274,11002628-11002662,11004285-110044... 25 8.6
06_03_1497 + 30585074-30586327 25 8.6
05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869 25 8.6
05_06_0124 - 25822176-25822633,25822738-25825420 25 8.6
03_03_0244 - 15772156-15773964,15774190-15774711 25 8.6
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 25 8.6
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581... 25 8.6
01_02_0100 - 11108275-11108535,11110333-11111619 25 8.6
>03_05_0831 - 28035794-28036447
Length = 217
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 113 RLACHHLGRHEHGSYCSVTRSAWYGGCVARTRTP 12
+L CH G H+H R+ GG AR P
Sbjct: 65 QLLCHGYGEHDHSRSVWSARADIPGGAAARLSLP 98
>11_02_0151 +
8837444-8837876,8838173-8839434,8839517-8839885,
8839963-8840223,8840230-8840442,8840602-8840967,
8841402-8841667,8842087-8842197,8842288-8842317,
8842444-8842465
Length = 1110
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 17 CACVQRNRRTMRSA*RCNSYHARAARDDGRPIE 115
CA +R +R+ R+ +Y+ A DDG+P+E
Sbjct: 602 CAKKKRGKRS-RNLMPKETYYIAALNDDGKPVE 633
>02_01_0794 - 5955763-5957238
Length = 491
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 168 PSCWRLSRCNTYSSGRLVSIGLP 100
PSC CNT+++G S+G+P
Sbjct: 124 PSCIISDWCNTWAAGVARSLGIP 146
>01_06_0216 +
27618116-27618548,27618960-27619042,27619169-27619225,
27619255-27619407,27619777-27619872,27620103-27620183,
27620184-27620254,27620343-27620385,27620502-27620582,
27620684-27620743,27621018-27621083,27621358-27621455,
27621794-27621842,27621933-27621977,27622845-27623369
Length = 646
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 121 STR*ISITTRESPTGRRRSQKP 186
+TR S TR SPT +R+S KP
Sbjct: 558 NTRSSSEDTRPSPTQKRKSSKP 579
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 45 PCAPRDAAIATMLVPPEMMAGQSKLVYQMNKYYNERVANRK 167
P AP D + LV +M+A +++ YY E R+
Sbjct: 392 PTAPTDFTLGMPLVGDDMLAKMGPACKELHGYYMEMSNTRR 432
>07_03_1695 - 28775525-28776098,28776586-28776693,28777129-28777448
Length = 333
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 148 RESPTGRRRSQKPYMKFV 201
R S +GRRRS+ P+++ V
Sbjct: 99 RRSSSGRRRSKSPFVRMV 116
>07_01_1162 -
11002193-11002274,11002628-11002662,11004285-11004419,
11004521-11005048
Length = 259
Score = 25.0 bits (52), Expect = 8.6
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 41 RTMRSA*RCNSYHARAARDDGRPIETSLPDE*VLQR 148
+T+RS C S++AR DDGR E + D LQR
Sbjct: 102 QTLRSLGLCYSWNAR---DDGRLQEVVIVDAPCLQR 134
>06_03_1497 + 30585074-30586327
Length = 417
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 65 CNSYHARAARDDGRPIETSLPDE*VLQRESRQQEGADHKNH 187
C++YH RAAR +PD ++RES + E D K +
Sbjct: 359 CDAYHDRAAR--------LVPDSLEMKRESCRHESRDLKTY 391
>05_07_0184 - 28253448-28253743,28253835-28254102,28254439-28255869
Length = 664
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +3
Query: 69 IATMLVPPEMMAGQSKLVYQMNKYYNERVANRKAQITKTIHEVCFIVQDVL 221
+A L+PP A S + + K R KAQI + +++C V+ L
Sbjct: 419 LAAALLPPTPSAAVSPMQRKPTKPRRRRQLKLKAQIIRDQNKICRKVKAAL 469
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 174 SAPSC-WRLSRCNTYSSGRLVSIGLPSSRAARA 79
+AP C W C+ +GR+ S+ LP+ A A
Sbjct: 59 AAPHCRWVYVSCDGGGTGRVTSLSLPNVAVAGA 91
>03_03_0244 - 15772156-15773964,15774190-15774711
Length = 776
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 75 TMLVPPEMMAGQSKLVYQMNKYYNERVANRKAQI 176
T+ +P SK VY+ + NERVA AQI
Sbjct: 611 TITLPISEYHSLSKRVYEAEELANERVAAALAQI 644
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 158 GDSLVVILIHLVD*FRLACHH 96
G+ LVV ++ L+ RL CHH
Sbjct: 44 GEFLVVDVVGLISEMRLFCHH 64
>01_05_0080 -
17957276-17957676,17957810-17957921,17958001-17958126,
17958199-17958331,17960069-17960193,17960314-17960409,
17960430-17960621,17960694-17960800,17961318-17961426,
17961538-17961624,17963017-17963103,17964254-17964379
Length = 566
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 92 RDDGRPIETSLPDE*VLQRE 151
+DDG P++ LP + VL RE
Sbjct: 151 KDDGLPVDIKLPVKHVLSRE 170
>01_02_0100 - 11108275-11108535,11110333-11111619
Length = 515
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 185 GFCDLRLPVGDSLVVILIHL 126
GF D+RL GD+LV+ ++++
Sbjct: 350 GFLDVRLEDGDTLVIPMVNI 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,518,386
Number of Sequences: 37544
Number of extensions: 112346
Number of successful extensions: 330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 55
effective length of database: 12,728,428
effective search space used: 267296988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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