Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F11
         (231 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...    54   2e-08
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...    54   2e-08
AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z82096-1|CAB05030.2|  229|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 20/45 (44%), Positives = 33/45 (73%)
 Frame = +3

Query: 96  MMAGQSKLVYQMNKYYNERVANRKAQITKTIHEVCFIVQDVLKEV 230
           M+     +VYQ+N Y+NE+V +RK ++TKT+  +  +VQ++LKEV
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEV 45


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 20/45 (44%), Positives = 33/45 (73%)
 Frame = +3

Query: 96  MMAGQSKLVYQMNKYYNERVANRKAQITKTIHEVCFIVQDVLKEV 230
           M+     +VYQ+N Y+NE+V +RK ++TKT+  +  +VQ++LKEV
Sbjct: 1   MLGHNQNVVYQVNNYFNEKVQHRKVRVTKTVQRIAKVVQEILKEV 45


>AF036703-2|AAB88557.3|  535|Caenorhabditis elegans Hypothetical
           protein T11F8.4 protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 150 RVANRKAQITKTIHEVCFIVQDV 218
           RVA R     K +HE C+I +D+
Sbjct: 121 RVAIRSLHAVKALHEACYIHRDL 143


>Z82096-1|CAB05030.2|  229|Caenorhabditis elegans Hypothetical
           protein ZK909.3 protein.
          Length = 229

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 108 QSKLVYQMNKYYNERVANRKAQI 176
           Q+KLV+  +K YN R   RKA I
Sbjct: 166 QAKLVHLADKLYNLRDLERKAPI 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,201,569
Number of Sequences: 27780
Number of extensions: 85493
Number of successful extensions: 228
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 56
effective length of database: 11,184,518
effective search space used: 223690360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)