Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F10
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch... 27 0.72
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 1.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 26 1.7
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo... 26 1.7
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 25 2.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 2.9
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 2.9
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 25 3.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 5.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 24 6.7
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 24 6.7
>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
Length = 830
Score = 27.1 bits (57), Expect = 0.72
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 56 SLNTNNPAGMADTPVESPPEATAPLTKLISEPFEAHSAYLRPS 184
++ +++PA + D +S P A AP L+ + F+A + ++PS
Sbjct: 330 NIPSSSPAYITDFFPKSNPGAPAPPGGLLRQAFQAQGSSIQPS 372
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 1.7
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +2
Query: 65 TNNPAGMADTPVESPPEATAPLTKLISEPFEAHSAYLRPS*QTISYKQNQYIIDLL 232
TNNP G A +A +L ++PF+ ++ P+ S + Y + L
Sbjct: 360 TNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAKARSSILLDDYALSKL 415
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 1.7
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 233 KVSQLCIDSVCMISFVSLAVSKPN 162
K ++C+DS+ +SF ++KPN
Sbjct: 194 KYVEVCVDSITSLSFDKTDMTKPN 217
>SPCC1739.05 |set5||histone lysine methyltransferase Set5
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 1.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -2
Query: 314 GTRLNHVEHPNHEATFNPKTNVIDLFA 234
G+R+NH PN + T+NP+ + + + A
Sbjct: 100 GSRMNHDCSPNVKHTWNPRLDQVTVHA 126
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 278 EATFNPKTNVIDLFAKVSQLCIDS 207
EA+ TNV DLF VS+L +++
Sbjct: 156 EASAKENTNVTDLFETVSRLALEN 179
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 281 HEATFNPKTNVIDLFAKVSQLCIDSVCMISFVSLAVSKP 165
H +F ++ FAK+ + + + +ISF+ LAV +P
Sbjct: 478 HYFSFALVLALVQQFAKIQTILLFVIEIISFILLAVFRP 516
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.0 bits (52), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 44 RLSKSLNTNNPAGMADTPVESPPEATAP 127
RLS + +PA + PV S + TAP
Sbjct: 595 RLSTGVQKQSPAASKEIPVTSGSQTTAP 622
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 24.6 bits (51), Expect = 3.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 258 FWIECSFMIGMFDVIQARSTTS 323
FW E +++G+ D +A +TTS
Sbjct: 66 FWNELVYLLGLNDTSKASATTS 87
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 24.2 bits (50), Expect = 5.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 50 SKSLNTNNPAGMADTPVESPPEATAPLTKLISEPFEAHSA 169
S L+ N A + TP++SP E+ + KL SE E +S+
Sbjct: 76 SPRLHQNATAPTSSTPLQSPDES---VNKLNSEDEEGNSS 112
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 59 LNTNNPAGMADTPVESPPEATAPLTKLISEPFEA 160
+ T A A TP +P + +AP L EP +A
Sbjct: 114 VETAAAAAPAATPAPAPAQTSAPAAALPDEPPKA 147
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 50 SKSLNTNNPAGMADTPVESPPEAT-APLTKLISEPFEAHSA 169
+ SLN + P+ +PV PP + +P T + + H A
Sbjct: 269 NSSLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMSSDGHLA 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,173,834
Number of Sequences: 5004
Number of extensions: 18368
Number of successful extensions: 65
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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