Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F10
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 29 1.1
03_06_0683 - 35522534-35522647,35523009-35523143,35523224-355233... 28 1.5
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 2.0
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 27 2.6
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 27 4.6
05_05_0017 + 21546434-21546841 26 6.1
02_02_0226 + 8056785-8057112,8057249-8057517,8057634-8058101,805... 26 6.1
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 26 6.1
11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496 26 8.0
05_04_0180 - 18797372-18798529 26 8.0
05_02_0028 - 5764980-5766374 26 8.0
02_02_0585 - 11859693-11859904,11860024-11860078 26 8.0
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762 26 8.0
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +2
Query: 50 SKSLNTNNPAGMA-----DTPVESPPEATAPLTKLISEPFEAHSAYLRPS 184
++S NTN+P D P P EA +P L +PF A + PS
Sbjct: 36 NRSSNTNSPVAFDWSDDDDNPSPPPMEAKSPNLPLPYDPFSKKPAVMEPS 85
>03_06_0683 -
35522534-35522647,35523009-35523143,35523224-35523346,
35523640-35523741,35523884-35524090,35524634-35524748,
35524839-35525048,35525135-35525234,35525448-35525609,
35525737-35526073,35526472-35526678,35527284-35527736
Length = 754
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 83 MADTPVESPPEATAPLTKLISEPFEAHSAYLRP-S*QTISYKQNQYIIDL 229
MAD V +PP T L EP EAH + +P S + + Y+ DL
Sbjct: 1 MADLAVAAPPP-----TDLFGEPIEAHPPWFKPDSFLRPDFDPDAYVADL 45
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 150 GSDMSLVRGAVASGGDSTGVSAMP 79
GSD++ GA SGG TG ++P
Sbjct: 367 GSDLTTEAGAANSGGSDTGAGSIP 390
>02_05_0286 -
27506925-27507278,27508439-27508812,27509041-27509218,
27510878-27511105,27511215-27511316,27511415-27512131,
27512270-27512387,27512500-27512744,27512854-27513054,
27513920-27514324
Length = 973
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 120 VASGGDSTGVSAMPAGLFVLSD 55
V +GGDST V+ +P+G +L D
Sbjct: 893 VMNGGDSTYVALLPSGFAILPD 914
>09_06_0020 -
20267190-20267612,20269086-20269495,20269573-20269747,
20270833-20271066,20271164-20271265,20271354-20272091,
20272204-20272321,20272417-20272667,20272768-20272932
Length = 871
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 120 VASGGDSTGVSAMPAGLFVLSD 55
V +GGDS VS +P+G +L D
Sbjct: 768 VMNGGDSAYVSLLPSGFAILPD 789
>05_05_0017 + 21546434-21546841
Length = 135
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 65 TNNPAGMADTPVESPPEATAP 127
+++PAG TP + P ATAP
Sbjct: 77 SSSPAGATTTPAPAAPAATAP 97
>02_02_0226 +
8056785-8057112,8057249-8057517,8057634-8058101,
8058198-8058632
Length = 499
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 308 RLNHVEHPNHEATFNPKTNVI 246
RLN +E+PNH T+NP+ I
Sbjct: 311 RLN-IENPNHADTYNPRAGRI 330
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 29 LRAFVRLSKSLNTNNPAGMADTPVESPPEATAP 127
LR F + +L+ PAG+A P PP P
Sbjct: 52 LRQFAEVESALSQQPPAGIAVHPSPPPPPPPPP 84
>11_02_0057 + 7851500-7852041,7852190-7852622,7853702-7854496
Length = 589
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/37 (32%), Positives = 16/37 (43%)
Frame = +2
Query: 62 NTNNPAGMADTPVESPPEATAPLTKLISEPFEAHSAY 172
+ NN AG D P+ PP TA +P S +
Sbjct: 15 DANNGAGSKDCPLPPPPPKTAKACAAAKKPRSVSSDF 51
>05_04_0180 - 18797372-18798529
Length = 385
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -1
Query: 123 AVASGGDSTGVSAMPAGLFVLSDLDSLTNALKMETASCR 7
A A+ S G+S P L S ++ L +A++ A C+
Sbjct: 323 AAAAAAMSGGISVGPVSLSTASSMEELQSAIEGAIAHCK 361
>05_02_0028 - 5764980-5766374
Length = 464
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 47 LSKSLNTNNPAGMADTPVESPPEATAPLT 133
L+KS+ +++P +P SPP + PL+
Sbjct: 287 LTKSIMSSSPTSTLVSPPRSPPSESPPLS 315
>02_02_0585 - 11859693-11859904,11860024-11860078
Length = 88
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = -2
Query: 302 NHVEHPNHEATFNPKTNVIDLFAKVSQLCIDSVCMISFVSLAVSKPN 162
N + + + E+ NP+ + + CI +VC+ ++L ++ N
Sbjct: 19 NKLANASAESNINPEADCSPAVIMIGDKCIPNVCLHKCLALGAARGN 65
>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
Length = 495
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = -2
Query: 263 PKTNVIDLFAKVSQLCIDSVCMIS--FVSLAVSKPN 162
P+TN+ ++S L + ++C I+ +VS +V+ PN
Sbjct: 294 PRTNLPSAVPRLSNLTVLTLCSIALQYVSASVATPN 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,535,141
Number of Sequences: 37544
Number of extensions: 111925
Number of successful extensions: 385
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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