Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F10
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022288-5|CAA18366.1|  301|Caenorhabditis elegans Hypothetical ...    29   0.79 
AL022288-1|CAA18362.1|  301|Caenorhabditis elegans Hypothetical ...    29   0.79 
AF045642-3|AAC02581.1|  588|Caenorhabditis elegans Hypothetical ...    27   2.4  
AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter o...    27   4.2  
Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    26   7.4  

>AL022288-5|CAA18366.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK1025.8 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 17  AVSILRAFVRLSKSLNTNNPAGMADTPVESPPEA-TAPLTKLISEPFEAHSAYLRPS*QT 193
           +V I+  FV   KSL   NP G     +   P   TAP  KLI+       + L  +   
Sbjct: 8   SVLIILYFVLKPKSLKGFNPDGFIKPFISYAPSFFTAPDNKLIACEIRKSMSQLTLNMMC 67

Query: 194 ISYKQNQYIID 226
           + Y + QY+ D
Sbjct: 68  LLYNETQYLQD 78


>AL022288-1|CAA18362.1|  301|Caenorhabditis elegans Hypothetical
           protein ZK1025.2 protein.
          Length = 301

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 17  AVSILRAFVRLSKSLNTNNPAGMADTPVESPPEA-TAPLTKLISEPFEAHSAYLRPS*QT 193
           +V I+  FV   KSL   NP G     +   P   TAP  KLI+       + L  +   
Sbjct: 8   SVLIILYFVLKPKSLKGFNPDGFIKPFISYAPSFFTAPDNKLIACEIRKSMSQLTLNMMC 67

Query: 194 ISYKQNQYIID 226
           + Y + QY+ D
Sbjct: 68  LLYNETQYLQD 78


>AF045642-3|AAC02581.1|  588|Caenorhabditis elegans Hypothetical
           protein C17H12.2 protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 68  NNPAGMADTPVESPPEATAPLTKLI-SEPFEAHSAYLR 178
           ++P  +  TPV+ P + T P+T L+   P   H   LR
Sbjct: 473 DSPVSLGKTPVQLPVKVTKPVTSLLYIAPSRRHLELLR 510


>AF025464-3|AAB71016.3|  949|Caenorhabditis elegans Transporter of
           sr proteins protein1 protein.
          Length = 949

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
 Frame = +2

Query: 17  AVSILRAFVR-LSKSLNTNNPAGM---ADTPVESPPEATAPLTKLISEP---FEAHSAYL 175
           A+ ++ A V+ L    +TN P  +      PV+SPP   A    LIS+    FE HS  L
Sbjct: 423 ALFVMSAVVQNLLPESDTNMPEVLQLICSLPVQSPPALIATSLSLISDLNDWFEQHSNLL 482

Query: 176 RP 181
            P
Sbjct: 483 EP 484


>Z68302-4|CAB54515.1|  521|Caenorhabditis elegans Hypothetical
           protein ZK792.8 protein.
          Length = 521

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 299 HVEHPNHEATFNPKTNVIDLFAKVSQLC 216
           HV H       NP TNV+D  +K ++ C
Sbjct: 396 HVAHEYIPIDINPNTNVVDSDSKKAKKC 423


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 296 VEHPNHEATFNPKTNVIDLFAKVSQLCIDSVCMISFVS 183
           V  P+H+ T+N +  +I +FA  +QL I +V  I  VS
Sbjct: 97  VRTPHHKVTYNDQCQIITIFA-TAQL-IPNVGKIEMVS 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,373,768
Number of Sequences: 27780
Number of extensions: 98689
Number of successful extensions: 327
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)