Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F09
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 68 1e-13
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 66 6e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 39 8e-05
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 33 0.005
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 24 2.4
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo... 23 4.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 23 5.5
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual 23 7.3
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 22 9.6
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 22 9.6
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 22 9.6
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 22 9.6
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 68.1 bits (159), Expect = 1e-13
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +1
Query: 118 MRECISVHIGQAGVQIGNACWELYCLEHGI 207
MRE ISVH+GQAGVQIGNACWELYCLEHGI
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGI 30
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 66.1 bits (154), Expect = 6e-13
Identities = 26/30 (86%), Positives = 28/30 (93%)
Frame = +1
Query: 118 MRECISVHIGQAGVQIGNACWELYCLEHGI 207
MRE IS+H+GQAG QIGNACWELYCLEHGI
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGI 30
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 39.1 bits (87), Expect = 8e-05
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 121 RECISVHIGQAGVQIGNACWELYCLEHGI 207
RE I++ GQ G QIG+ W+ CLEHGI
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGI 31
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 33.1 bits (72), Expect = 0.005
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 118 MRECISVHIGQAGVQIGNACWELYCLEHGI 207
MRE + + GQ G Q+G A W EHG+
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGL 30
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 7 PGAALIRHDGALHCEPATPHALHITTAF 90
P +AL+ P P A+H++TAF
Sbjct: 705 PSSALVSATSPTTNVPIVPEAVHLSTAF 732
>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 568
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 33 WCVALRTRDATRAPYYDSL 89
WC+A+ + R Y+DSL
Sbjct: 464 WCMAVINKSKKRFEYWDSL 482
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 52 PATPHALHITTAFCKLSSTYTK 117
PA+PH L K + TYTK
Sbjct: 388 PASPHTLKSVKDDLKRTKTYTK 409
>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 176 HALPI*TPACPMCTEMHSLIL 114
H +PI TPA P H++ L
Sbjct: 297 HRMPIITPAYPSMCATHNITL 317
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 195 EAVQLPACVADLNSGLP 145
E +P CVADL LP
Sbjct: 19 ETKDIPKCVADLKFPLP 35
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 16 ALIRHDGALHCEPAT 60
A + H+GAL+ PAT
Sbjct: 475 ACLDHEGALYASPAT 489
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 157 LRLARCVLRCIPSFW 113
L L+ CVLRC S W
Sbjct: 148 LFLSHCVLRCCLSNW 162
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -1
Query: 142 CVLRCIPSFWY 110
CVL C+ +WY
Sbjct: 209 CVLWCLDDYWY 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,638
Number of Sequences: 5004
Number of extensions: 15992
Number of successful extensions: 33
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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