Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F09
         (208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.094
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.094
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   2.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.2  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.094
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 187 TAPSMRCRSELRLARCVLRCIPSFWYML 104
           T+ S  C     LA+CV    P  W+++
Sbjct: 117 TSGSDNCNKIYNLAKCVQESAPDVWFVI 144


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 25.0 bits (52), Expect = 0.094
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 187 TAPSMRCRSELRLARCVLRCIPSFWYML 104
           T+ S  C     LA+CV    P  W+++
Sbjct: 117 TSGSDNCNKIYNLAKCVQESAPDVWFVI 144


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 157 LRLARCVLRCIPSFWYMLKIIYK 89
           L LA   + C+ + WY   ++Y+
Sbjct: 12  LLLAASPIDCVDANWYKNALVYQ 34


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 148 ARCVLRCIPSFWYML 104
           A CVL C  + +Y++
Sbjct: 103 ATCVLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 148 ARCVLRCIPSFWYML 104
           A CVL C  + +Y++
Sbjct: 156 ATCVLSCWTNIYYII 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,225
Number of Sequences: 438
Number of extensions: 1221
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)