Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F08
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   1.6  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    24   6.3  
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    24   6.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    24   6.3  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    24   6.3  

>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 332 TAHCASSRASAETFAPVREFSAVHHQVAGVGVREPVRITHRGRGLRVAP 186
           +  C S    AE  A  R  S V   V  + V EP+ + HR R + + P
Sbjct: 57  SVQCRSPWWIAEQVAVSRSKSYVSEPVIHLNVMEPLYVDHRIRSVYLQP 105


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +3

Query: 123 PNVCLSRLQTSC---PQHACINNTGCNSQSASPVCDTDGLTHANP 248
           PN+  S L  +C   P + C N+   +S S++ + D   L + NP
Sbjct: 639 PNIT-SLLDGTCSSPPNNECFNDKEPDSSSSTLISDRQELEYRNP 682


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 LANIMSATRLHKQYRVQLSVRVPGV*YGRAHA 238
           + N ++ +R+H+QY V+     P    GR HA
Sbjct: 16  IGNTLADSRIHEQYLVKAFPNEPVDYEGRMHA 47


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +2

Query: 173 HKQYRVQLSVRVPGV*YGRAHARQPLPPDDERQKTRVLGRMSQRMLCYWH 322
           H  + V L+++ P +       + PLPP+ E     ++ +++Q  +  W+
Sbjct: 62  HNNHSVILNIKHPELGEPLKPYQTPLPPELEAPLQLLISKLTQHYINGWY 111


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 117 AHTRAGADTRRPRTPHALRNLSPRPSH 37
           +H+ A   T          NLSPRPSH
Sbjct: 412 SHSEASDGTSDVHLTPLFSNLSPRPSH 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,779
Number of Sequences: 5004
Number of extensions: 24024
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)