Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F08
(363 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 30 0.64
06_03_0570 - 22363197-22363588,22363755-22366782 28 2.0
02_02_0442 - 10318576-10319109 28 2.0
04_01_0615 - 8060085-8060972 28 2.6
12_01_0963 + 9608858-9609538 27 3.4
09_04_0463 - 17803120-17803233,17803647-17803758,17803866-178039... 27 3.4
08_01_0056 + 379270-379803 27 3.4
03_02_0096 - 5600815-5601348 27 3.4
12_01_0440 - 3478361-3479152,3479163-3479681 27 6.0
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 27 6.0
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 27 6.0
11_01_0232 + 1794081-1795175,1796087-1796782 26 7.9
08_02_0716 + 20364848-20364978,20365011-20365230 26 7.9
06_03_1356 - 29536027-29537379 26 7.9
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 26 7.9
03_05_0763 - 27528425-27528949 26 7.9
03_05_1007 - 29637911-29638333,29640095-29640282,29640688-296407... 23 8.8
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 29.9 bits (64), Expect = 0.64
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 347 SDSVDTAHCASSRASAETFAPVREFSAVHHQVAGVGVREPVRITHRGRGLRVAPGIVYAS 168
S++ +A SS +A AP R+F + + A V ++ R R LR GIV
Sbjct: 57 SETSSSADALSSVVAAVVRAPPRDFRLIRQEWAAVRIQTAFRAFLARRALRALRGIVRLQ 116
Query: 167 VL 162
L
Sbjct: 117 AL 118
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +3
Query: 255 LMMNGRKLAYWGECLSGCSATGTVCG 332
L N R LA W E L C+ G CG
Sbjct: 52 LSNNARSLASWNESLQFCTWPGITCG 77
>02_02_0442 - 10318576-10319109
Length = 177
Score = 28.3 bits (60), Expect = 2.0
Identities = 21/46 (45%), Positives = 24/46 (52%)
Frame = -1
Query: 177 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 40
LC + AD + ASAR VR RA RRP P +LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPP---PSLSPEPS 122
>04_01_0615 - 8060085-8060972
Length = 295
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 108 RAGADTRRPRTPHALRNLSPRPSHPRAEFQQP 13
RAG + +R SP P+ P+AE QQP
Sbjct: 39 RAGFEAKRAAVETTPTTPSPMPTLPKAEVQQP 70
>12_01_0963 + 9608858-9609538
Length = 226
Score = 27.5 bits (58), Expect = 3.4
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -1
Query: 177 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 40
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 130 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 171
>09_04_0463 -
17803120-17803233,17803647-17803758,17803866-17803927,
17804171-17804269,17804370-17804474,17804560-17804639,
17806445-17806517,17806611-17806700,17807215-17807277,
17808104-17808155,17808504-17808604,17809139-17809238,
17809683-17809746,17810127-17810184,17810549-17810635,
17810736-17810870,17810950-17811054,17811247-17811351,
17811427-17811663,17812287-17812380,17812863-17813020,
17813289-17813363,17813448-17813512,17814206-17814260
Length = 762
Score = 27.5 bits (58), Expect = 3.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 23 NSARGCDGRGDRFRSACGVRG 85
N GCDG D F CGV G
Sbjct: 553 NGEGGCDGCNDNFSWNCGVEG 573
>08_01_0056 + 379270-379803
Length = 177
Score = 27.5 bits (58), Expect = 3.4
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -1
Query: 177 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 40
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 122
>03_02_0096 - 5600815-5601348
Length = 177
Score = 27.5 bits (58), Expect = 3.4
Identities = 21/46 (45%), Positives = 23/46 (50%)
Frame = -1
Query: 177 LCKRVADMMFASARGRR*VRAHTRAGADTRRPRTPHALRNLSPRPS 40
LC + AD + ASAR VR RA RRP P LSP PS
Sbjct: 81 LCAK-ADTIAASARLGHPVRRRRRAHRRRRRPSPPPP---LSPEPS 122
>12_01_0440 - 3478361-3479152,3479163-3479681
Length = 436
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 290 APVREFSAVHHQVAGVGVREPVRITHRGRGLRVA 189
A VRE S +HH G R P + + RG VA
Sbjct: 396 ARVRETSQLHHHREGGAARRPAQDGYGQRGAAVA 429
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -2
Query: 329 AHCASSRASAETFAPVREFSAVHHQVAGVGVREPVRITHRGRGLRVAPGIVYASVL 162
A SS +A AP R+F + + A V V+ R R L+ GIV L
Sbjct: 55 ADAFSSVVAAVVRAPPRDFRVIRQEWAAVRVQAAFRAFLARRALKALRGIVRLQAL 110
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 261 MNGRKLAYWGECLSGCSATGTVCGVNGVT 347
+NG + +W C + S TG VC V ++
Sbjct: 1038 INGHAIDFWNICENDESCTGDVCEVRALS 1066
>11_01_0232 + 1794081-1795175,1796087-1796782
Length = 596
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 44 GRGDRFRSACGVRGRRVSAPARVCART*RLPLALA 148
G G RF + C R RVSA VC R LP +A
Sbjct: 549 GCGHRFHAECAERWLRVSATCPVC-RDSPLPSPMA 582
>08_02_0716 + 20364848-20364978,20365011-20365230
Length = 116
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 278 EFSAVHHQVAGVGVREPVRITH 213
+++A+ H +GVRE + +TH
Sbjct: 18 QYAAISHTATSIGVREIILLTH 39
>06_03_1356 - 29536027-29537379
Length = 450
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 51 PRPSHPRAEFQQPGG 7
PRPS+P E+++P G
Sbjct: 210 PRPSYPHLEYREPAG 224
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 14 GCWNSARGCDGRGDRFRSACGVRGRRVSAPAR 109
GC RGD ++S C VR VSA R
Sbjct: 371 GCIQVIDKTTARGDSWKSGCSVRHNTVSAGKR 402
>03_05_0763 - 27528425-27528949
Length = 174
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 249 CHLMMNGRKLAYWGECLSGCSATGTVCGVNGV 344
C++ G LAY+ + + G A GT+ G++G+
Sbjct: 73 CYIWF-GSHLAYFEDAIRGRIAYGTITGLSGI 103
>03_05_1007 -
29637911-29638333,29640095-29640282,29640688-29640773,
29641108-29641173,29641289-29641331,29641398-29642328
Length = 578
Score = 23.0 bits (47), Expect(2) = 8.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = -1
Query: 117 AHTRAGADTRRPRTPHALRNLSPRPSHPRA 28
++ A A + R PH +++ P P H A
Sbjct: 27 SYAAAAAPSPSARNPHPPQSVHPHPPHSAA 56
Score = 21.4 bits (43), Expect(2) = 8.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 54 SPRPSHPRAEFQQPGGS 4
SP PS P AE + GG+
Sbjct: 90 SPSPSPPSAEARYGGGT 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,409,933
Number of Sequences: 37544
Number of extensions: 208674
Number of successful extensions: 851
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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