Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F08
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   0.64 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 0.64
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 102 GADTRRPRTPHALRNLSPRPSHPRAEF 22
           G  TRR +  H  +N SP    PR  F
Sbjct: 1   GPRTRRVKRSHNGKNGSPEEKRPRTAF 27


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 210 PVCDTDGLTHANPCHL 257
           PVC ++G  +AN C L
Sbjct: 116 PVCASNGKIYANHCEL 131


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 301 LRHSPQYASFLPFIIRWQGL 242
           L HSP Y     + + W+G+
Sbjct: 662 LNHSPNYDQVTNWYMGWKGM 681


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 227 VRITHRGRGLRVAPGI 180
           V +TH G  L V PGI
Sbjct: 91  VVVTHNGSCLYVPPGI 106


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 227 VRITHRGRGLRVAPGI 180
           V +TH G  L V PGI
Sbjct: 159 VVVTHNGSCLYVPPGI 174


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 227 VRITHRGRGLRVAPGI 180
           V +TH G  L V PGI
Sbjct: 159 VVVTHNGSCLYVPPGI 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,403
Number of Sequences: 438
Number of extensions: 1847
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)