Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F07
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 26 1.0
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 1.4
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 24 3.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 4.1
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 24 4.1
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 23 5.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 23 5.5
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 23 7.2
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 23 7.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 23 7.2
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 23 9.6
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 23 9.6
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 25.8 bits (54), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +3
Query: 126 YYVFLLHYLITAYNQSLQCYLYANNMSDNLYDKLGF*SAV 245
Y + + H L Y + C+L A+ M+ +Y+ LG+ ++V
Sbjct: 167 YLLDMAHDLADEYQ--IPCFLMASKMAFKMYEHLGYKTSV 204
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 1.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 183 NTVNFDCMQLLNNVKEKRNTWINN 112
N + D QLL++VK+ ++ W N+
Sbjct: 272 NATDADVKQLLSDVKKNKSKWAND 295
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = +3
Query: 135 FLLHYLITAYNQSLQCYLYAN-NMSDNLYD-----KLGF*SAV 245
F+LH++ YN S ++Y N ++ LY K GF +AV
Sbjct: 152 FVLHFVSFLYNSSFISHIYGNYDVFSTLYTVILKRKFGFETAV 194
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 23.8 bits (49), Expect = 4.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -1
Query: 219 HTNYHSCYWHINNTVNFDCMQLLNNVKEKRNTWINNIFNEI 97
HTNY + IN + +LLN + +N I + ++I
Sbjct: 850 HTNYETVSADINQNLKETLDKLLNGSSDFKNNEIELLHDQI 890
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 23.8 bits (49), Expect = 4.1
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 28 ETVIMLLYDANKEIVEIKKKH-LLNFI 105
E+ + +LY+AN++I +I K + L FI
Sbjct: 72 ESGVSILYEANEDITQIPKVYGLCRFI 98
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 23.4 bits (48), Expect = 5.5
Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Frame = -1
Query: 216 TNYHSCYWHINNTVN----FDCMQLLNNV 142
TN+ +CYW+++ + +D ++ + NV
Sbjct: 360 TNFANCYWNVDKYIRARTVYDRLKWIGNV 388
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 23.4 bits (48), Expect = 5.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 120 SMYYVFLLHYLITAYNQSLQCYLYANNMSDNLYDKL 227
S Y++ +H +I + +QC ++ +NLY L
Sbjct: 1372 STYFMEGIHDVIVGLLKGIQCQQSDESIRENLYGSL 1407
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 23.0 bits (47), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 58 NKEIVEIKKKHLLNFIE 108
NK+I +K +HLLN I+
Sbjct: 544 NKDIFALKMEHLLNEIQ 560
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 144 HYLITAYNQSLQCYLYANNMSDNLYD 221
HY Y L C N+ SDNL D
Sbjct: 320 HYFKDTYIGDLLCISPINHSSDNLSD 345
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 23.0 bits (47), Expect = 7.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 159 AYNQSLQCYLYANNMSDNLYDKLGF 233
++NQ L Y N+M D LYD L +
Sbjct: 339 SFNQPLPSY--QNSMYDRLYDGLSY 361
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 22.6 bits (46), Expect = 9.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +1
Query: 229 VFDLQYNKKWICS 267
+FD N+ WICS
Sbjct: 599 IFDTVSNRNWICS 611
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 22.6 bits (46), Expect = 9.6
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -1
Query: 210 YHSCYWHINNTVNFDCMQLLNNVKEKRNTW 121
Y+ H+N+ V Q L+ + NTW
Sbjct: 454 YNDSITHMNSYVGGPFQQALSGITTLNNTW 483
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 982,618
Number of Sequences: 5004
Number of extensions: 15860
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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