Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F07
(267 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0145 - 13381172-13381334,13381468-13381665,13381753-133819... 30 0.29
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 27 1.6
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 27 2.1
09_03_0189 - 13300803-13300988,13301066-13301158,13301242-133013... 26 3.6
08_01_0998 - 10136050-10138356 26 3.6
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200 26 4.8
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497 26 4.8
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371... 26 4.8
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 26 4.8
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083... 25 8.3
>10_07_0145 -
13381172-13381334,13381468-13381665,13381753-13381952,
13382036-13382149,13382255-13382391,13382501-13382611,
13383793-13384060,13385034-13385132,13385277-13385471
Length = 494
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 58 NKEIVEIKKKHLLN---FIENIIYPCITFFFYII 150
NKE+ KK HLL F+ I P +TF FY I
Sbjct: 307 NKEVSMWKKYHLLYSFFFVRRAIAPILTFLFYCI 340
>11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -1
Query: 237 IKNLTCHTNYHSCYWHI-NNTVNFDCMQLLNNVKE 136
++N+ N C +H+ NN VN+D ++L+N+ +
Sbjct: 964 VENIPEQQNGDDCSFHVFNNMVNWDGLRLVNSTSQ 998
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 237 IKNLTCHTNYHSCYWHI-NNTVNFDCMQLLNNVKE 136
++N+ N C +H+ NN VN+D + L+N+ +
Sbjct: 778 VENIPKQQNGDDCGFHVFNNMVNWDGLHLVNSTSQ 812
>09_03_0189 -
13300803-13300988,13301066-13301158,13301242-13301320,
13301409-13301519,13301582-13301746,13301917-13301990,
13302114-13302635
Length = 409
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -1
Query: 246 ILQIKNLTCHTNYHSCYWHINNTVNFDCMQLLNNVKEKRNTW 121
I I+ CH +H CY H++ FD L E +N W
Sbjct: 363 IANIQRDLCHFIHHECY-HVDGKF-FDPEGALATSDENKNLW 402
>08_01_0998 - 10136050-10138356
Length = 768
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 252 LVILQIKNLTCHTNYHSCYWHINNTVNFD 166
L IL + N H SC WH+ + V D
Sbjct: 381 LEILDLSNNHLHGEIPSCLWHLQDLVFMD 409
>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
Length = 405
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 61 KEIVEIKKKHLLNFIENIIYPCITFFF 141
K I E+K+K N +E IIY I + F
Sbjct: 140 KRIAEVKEKERQNTLEEIIYCWIIYKF 166
>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
Length = 405
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 61 KEIVEIKKKHLLNFIENIIYPCITFFF 141
K I E+K+K N +E IIY I + F
Sbjct: 140 KRIAEVKEKERQNTLEEIIYCWIIYKF 166
>03_01_0490 +
3711009-3711383,3712104-3712202,3713209-3713461,
3713908-3714090,3714091-3714227,3714511-3714710,
3714797-3714994,3715109-3715271
Length = 535
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +1
Query: 79 KKKHLLN---FIENIIYPCITFFFYII 150
KK HLL F+ ++ P +TF FY +
Sbjct: 355 KKLHLLYSFFFVRRVVAPILTFLFYCV 381
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 195 WHINNTVNFDCMQLLNNVKEKRNTWINNIFNEI 97
W IN +NF+ +LL N K + +N ++ I
Sbjct: 99 WEINGDINFNWKRLLEN-KTQEIVRLNGVYQRI 130
>09_04_0261 +
16207565-16207825,16207935-16208087,16208191-16208316,
16208595-16208847,16209303-16209485,16209486-16209582,
16209706-16209769,16209904-16210053,16210215-16210387,
16210497-16210536,16211170-16211223
Length = 517
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +1
Query: 79 KKKHLLN---FIENIIYPCITFFFY 144
KK HLL F+ ++ P +TF FY
Sbjct: 385 KKLHLLYSFFFVRRVVAPILTFLFY 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,275,125
Number of Sequences: 37544
Number of extensions: 71190
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -