Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F06
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    23   4.2  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    23   5.5  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    23   5.5  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    23   5.5  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    23   7.3  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    23   7.3  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    22   9.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    22   9.6  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 6   GVMLVSQNCTREKGQIGLSVESQRYVRWEILVLRLYS 116
           G +++  +    +G+  ++V   RY+RW     R YS
Sbjct: 51  GKLVIIMSGLPARGKSNIAVSIDRYLRWLGFNCRFYS 87


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 129 GRWSPNTSVARVFPNGRTAG 70
           G W+PN    R  PN +  G
Sbjct: 413 GNWTPNNPENRPLPNRKKTG 432


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 139 RFSWTMVAEYKRSTSISQRTYRWLSTLRPIWPFSRVQF*LTSITP 5
           +FS +  A     ++++        TLR + PF++ QF L  + P
Sbjct: 210 KFSSSFCAFQNNPSTVNTNNADRSMTLRGLGPFAKEQFYLKGLDP 254


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
          phosphopantetheinyl transferase
          Lys7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 94 ISQRTYRWLSTLRPIWPFSRVQ 29
          + Q+ YR L   +  WPF R +
Sbjct: 1  MKQKVYRLLIDTQEAWPFERTR 22


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 105 VARVFPNGRTAGFRHSDRFGLFRACSFD 22
           +   F N +T    +S RFG +   SFD
Sbjct: 202 IMEAFGNAKTIRNDNSSRFGKYVTISFD 229


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 126 RWSPNTSVARVFPNGRTAGFRHSD 55
           +WSPN    ++  N  T G   +D
Sbjct: 283 KWSPNAKFIQIDTNAETLGNNAAD 306


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -3

Query: 129  GRWSPNTSVARVFPNGRTAGFRHSDRFGL 43
            G W  NT     F   +   F+HS  F L
Sbjct: 1187 GFWVANTHALLAFVYTKQQAFKHSSAFTL 1215


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 130 WTMVAEYKRSTSISQRTYRWLSTLRPIWPF 41
           W  VA+   STS +    R ++ +  +WP+
Sbjct: 541 WISVAKRLISTSHNMSIVRSITFIYAVWPY 570


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,705
Number of Sequences: 5004
Number of extensions: 7290
Number of successful extensions: 22
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)