Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F06
         (140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0423 + 22032940-22033695                                         26   4.8  
11_03_0208 - 11682869-11683459                                         25   6.4  
11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215     25   8.4  

>01_05_0423 + 22032940-22033695
          Length = 251

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 132 RGRWSPNTSVARVFPNGRTAGFRHSDR-FGL 43
           R R +P   +AR FP  + A FR++ R FG+
Sbjct: 48  RRRCTPECRLARYFPANQPARFRNAHRLFGI 78


>11_03_0208 - 11682869-11683459
          Length = 196

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 8  RNACQSKLHARKRPNRSECRKP 73
          R +C+S LH+  R  R+  R+P
Sbjct: 18 RRSCRSHLHSHHRGGRAPARRP 39


>11_06_0440 - 23567567-23567952,23568192-23569875,23583064-23584215
          Length = 1073

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 51  IGLSVESQRYVRWEILVLRLYSATIVH 131
           + L + S  ++RW I    L SA I+H
Sbjct: 282 LSLDLSSNNFIRWSIPSAPLISAPILH 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,774,995
Number of Sequences: 37544
Number of extensions: 50371
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)