Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F06
         (140 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of d...    25   9.7  
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 20 protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 101 HEYFPTDVPLAFDTQTDLAFFARAVLTDK 15
           H Y  TD PL    +T+   F+  + TDK
Sbjct: 172 HAYLYTDFPLDTAEETNTQIFSNPMHTDK 200


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
           protein ZK783.1 protein.
          Length = 2585

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +2

Query: 5   GRNACQSKL-HARKRPNRSECRK 70
           G+N CQ K  H+ K P++S CRK
Sbjct: 288 GKN-CQRKCGHSVKLPSKSSCRK 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,231
Number of Sequences: 27780
Number of extensions: 40943
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)