Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F05
(375 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 52 2e-08
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 42 2e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 41 6e-05
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 40 1e-04
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 40 1e-04
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 40 1e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 40 2e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 2e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 38 5e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 9e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 36 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.002
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.002
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 34 0.006
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.006
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 33 0.011
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.015
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.015
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.026
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 32 0.034
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.045
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 31 0.078
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.078
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.24
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 29 0.31
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 28 0.55
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 27 0.96
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 1.3
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.3
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 26 1.7
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 2.9
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 2.9
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 2.9
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom... 25 5.1
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.0
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 24 9.0
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 24 9.0
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 52.4 bits (120), Expect = 2e-08
Identities = 19/72 (26%), Positives = 41/72 (56%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 326
++FVG + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 327 QGITIEAAKSRK 362
I +E A+ +
Sbjct: 65 SRIVVEPARGER 76
Score = 41.5 bits (93), Expect = 4e-05
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR---NYGFVHMENEQVGREAIQNLNGE 314
F++ V NLS+ + DL+ + K G D R G V E+ R A+ +LNGE
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGE 157
Query: 315 LVHGQGITI 341
++ GQ +T+
Sbjct: 158 VIKGQAVTL 166
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.3 bits (95), Expect = 2e-05
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +3
Query: 138 GTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 296
GT +F+ NL + L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 297 QNLNGELVHGQGITIEAAKSRK 362
+++NG L++ + + + SR+
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRR 247
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 41.1 bits (92), Expect = 6e-05
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Frame = +3
Query: 105 AADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDI----VR--------N 248
A T A F++FVG LS T +++R LFE GTV + I VR
Sbjct: 31 AEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSG 90
Query: 249 YGFVHMENEQVGREAIQNLNGELVHGQGITIEAAK 353
FV N++ +AI+ LNG+ + + I ++ A+
Sbjct: 91 IAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
Score = 26.6 bits (56), Expect = 1.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 243 RNYGFVHMENEQVGREAIQNLNGELVHGQGITIEAAKSRK 362
R +GFV N + AI+ +NG+ V + +++A R+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 40.3 bits (90), Expect = 1e-04
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV ++ + + +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 306 NGELVHGQGITIEAAKSRKAPS 371
N + +G+ + ++ AK + S
Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHS 184
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 40.3 bits (90), Expect = 1e-04
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 11/69 (15%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI-- 296
K+F+G L+ +TTD LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 297 -QNLNGELV 320
+L+G+++
Sbjct: 224 EHHLDGKII 232
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 39.9 bits (89), Expect = 1e-04
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 147 KIFVGNLSDKT-TDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 323
++F+G+L+ K+ + +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 324 GQGITIEAAKSRK 362
GQ + +E +K +K
Sbjct: 424 GQKLHLEISKIQK 436
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.5 bits (88), Expect = 2e-04
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAI 296
F IFVG+L T D+DL F Y + I+ R YGFV +E+ + A+
Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
Query: 297 QNLNGELVHGQGITIEAAKSRKAPS 371
++ G L G+ + I A + S
Sbjct: 242 MHMQGYLCQGRPLRISVASPKSRAS 266
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 2e-04
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Frame = +3
Query: 144 FKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 302
F++FVGNL + D L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 303 LNGELVHGQGITIEAAKSRKAPS 371
NG+ + + + + A S P+
Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPN 112
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 38.7 bits (86), Expect = 3e-04
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 308
I+VGNL T+D +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 309 GELVHGQGITIEAA 350
G G+ + + A
Sbjct: 342 GYRYGGRPLQLSYA 355
Score = 28.3 bits (60), Expect = 0.42
Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 305
+++VGNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 306 NGELVHGQGITIEAAKSRKA 365
+ + G+ + I + + A
Sbjct: 127 SNQKFMGRLVYIREDREQNA 146
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 37.9 bits (84), Expect = 5e-04
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV L+ T D DL +F ++G ++ C ++R+ Y F+ +N++ +A +
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKM 305
Query: 306 NGELVHGQGITIEAAKS 356
L+ I ++ ++S
Sbjct: 306 QNVLIDDSRIHVDFSQS 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.1 bits (82), Expect = 9e-04
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +3
Query: 141 TFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 296
T +FVG LS D L FE+YGT+V ++ + YG+V E + + A+
Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 297 QNLNGELVHGQGITIEAAKSRKA 365
+ + G+ + ++ + R A
Sbjct: 322 AANGTKEIDGRMVNLDLSNPRPA 344
Score = 26.6 bits (56), Expect = 1.3
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 305
+FVGNLS T+ DL F G + + ++ +G+V + ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 306 NGELVHGQGITIEAAKSR 359
NG + G+ ++ + R
Sbjct: 427 NGHFIAGRPCRLDFSTPR 444
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 305
+F+GNL + T+ ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 27.5 bits (58), Expect = 0.73
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIVR--NYGFVHMENEQV 281
+++ + G + I++GN D T L+ FE++G + + R N FV+ +
Sbjct: 402 SNIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLAS 461
Query: 282 GREAIQNL 305
AI +
Sbjct: 462 AINAIDRI 469
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.3 bits (80), Expect = 0.002
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNG 311
+FVG LS ++ +L+ LF+ +G +V I + GFV N Q AI L G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQG 360
Score = 34.3 bits (75), Expect = 0.006
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = +3
Query: 117 ETKMPGAGTFKIFVGNLSDKTTDADLRPLFE---------KYGTVVECDIVRNYGFVHME 269
E + A + IFVG+LS + D+ LF K T + ++ R YGFV
Sbjct: 177 EKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Query: 270 NEQVGREAIQNLNGELVHGQGITIEAA 350
+E + A+ + G++ + I + A
Sbjct: 237 DENDQKSALAEMQGQICGDRPIRVGLA 263
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.002
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Frame = +3
Query: 120 TKMPGAGTFKIFVGNLSDKTTD--ADLRPLFEKYGTVVEC--------DIVRNYGFVHME 269
T P +FV NL D L LF K+G + C +I + YGFV
Sbjct: 411 TSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
Query: 270 NEQVGREAIQNLNGELVHGQGITIEAAKSRK 362
+ +AI LNG L + + + A+ R+
Sbjct: 471 HPFEAVQAINTLNGVLFGKKRLFVNYAEKRE 501
Score = 30.7 bits (66), Expect = 0.078
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 290
I+VGNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 291 AIQNLNGELVHGQGITIE 344
AI +LNG G + +E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 34.3 bits (75), Expect = 0.006
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+F+ LS T ++D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 306 NGELVHGQGITIEAAKSR 359
G +++G+ I ++ + R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 34.3 bits (75), Expect = 0.006
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVEC----DIVRN----YGFVHMENEQVGREAIQNL 305
I++GNL +K TD+ L L + G VV D VRN +GF +EQ A Q L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 306 NGELVHGQGITIEAAKSRKAPST 374
N + G+ I + A + +T
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNT 95
Score = 31.1 bits (67), Expect = 0.059
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FVGNL + L F G +V+ V + YGFV ++ + AI+ +
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 306 NGELVHGQGITIEAAKSRK 362
N + + + IT+ A R+
Sbjct: 161 NNQFLMNKPITVSYAFKRE 179
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 33.5 bits (73), Expect = 0.011
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 311
+F+ NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.1 bits (72), Expect = 0.015
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV NL+ +T DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 306 NGELVHGQGITIEAAKSRK 362
+ +HG+ + ++ A RK
Sbjct: 67 KNKKLHGRILRLDFATPRK 85
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 33.1 bits (72), Expect = 0.015
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 308
+ VGNL+ T++ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 309 GELVHGQGITIEAA 350
++ + I + A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.026
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +3
Query: 129 PGAGTFKIFVGNLSD-KTTDADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 290
P + IFVG L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 291 AI 296
A+
Sbjct: 420 AV 421
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 31.9 bits (69), Expect = 0.034
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 305
++ V N+ TD D++ +FE +G + + R+ +G++ N R A++ +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 306 NGELVHGQGITI 341
NG + G+ + +
Sbjct: 401 NGFDLAGRNMRV 412
Score = 28.7 bits (61), Expect = 0.31
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 305
+FV L+++ T +L FE+ G V + IVR+ +V +E + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 306 NGELVHGQGITI---EAAKSRKA 365
+G+ + G + + EA K+RKA
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKA 323
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 31.5 bits (68), Expect = 0.045
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 108 ADVETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQV 281
A +E T ++VGNL + + F YGTV ++ ++ F++ ++ +
Sbjct: 575 ATIENLTQHEPTHALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVET 634
Query: 282 GREAIQNLNGELV 320
+ ++ LNG+ +
Sbjct: 635 AKHVLEELNGKRI 647
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 30.7 bits (66), Expect = 0.078
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTV 224
+FVGNL +TTDADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.078
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 135 AGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 308
A + +F+GNL + ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 305
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.24
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 293
+F+G ++ + LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.7 bits (61), Expect = 0.31
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRP----LFEKYGTVVE 230
++V NL+DK DLR LF YGTVV+
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVD 36
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.9 bits (59), Expect = 0.55
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 147 KIFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN 248
++FV N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 27.1 bits (57), Expect = 0.96
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQ-NLNGELVHG 326
+FV N+ +T+D L+ +G V + R G ++ + V E +Q LN + +
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYV--DFVNHECVQLALNKKTLQI 374
Query: 327 QGITIEAAKSRK 362
T+ + R+
Sbjct: 375 NNATLNIEERRR 386
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 1.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTV 224
I+VGN+ + +D ++ F KYG V
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQV 43
Score = 26.2 bits (55), Expect = 1.7
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Frame = +3
Query: 150 IFVGNLSDK--TTDADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 299
++V NL D T + L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 300 NLNGELV 320
LNG +V
Sbjct: 444 TLNGMMV 450
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTV 224
++VGNLS TT+ + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 26.2 bits (55), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 114 VETKMPGAGTFKIFVGNLSDKTTDADLRPLFEKYGTVVECD 236
++ +M G K + ++ TD +LRP+ EK+ V++ D
Sbjct: 11 IDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLD 51
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 2.9
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +3
Query: 255 FVHMENEQVGREAIQNLNGELVHGQGITIE 344
F+H +N + +E ++ + E H QG++ +
Sbjct: 236 FLHNKNTGLDKETLKAIENEFYHPQGVSTQ 265
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 2.9
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
+FVGN+ ++ + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 306 NGELVHGQGITIE 344
N + + I +E
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 2.9
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 305
++VGN+ + + + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 306 N 308
N
Sbjct: 67 N 67
>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 5.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +3
Query: 111 DVETKMPGAGTFKIFVGNLSDK--TTDADLRPLFEKYGTV-VECDIVRNY 251
D+ T + F I++GN SDK T DL P + + + + I++ Y
Sbjct: 6 DISTVVVQIDEFGIYIGNASDKEPTWKVDLVPYKQSWVPISIVTTIIQRY 55
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 23.8 bits (49), Expect = 9.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 291 AIQNLNGELVHGQGI-TIE-AAKSRKAPS 371
A+QN+NG + QG +I A+K+ APS
Sbjct: 218 AVQNVNGTIKESQGTESISFASKNNSAPS 246
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 23.8 bits (49), Expect = 9.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRNYG 254
+ + N+S TT+ L+ KY +++ +I G
Sbjct: 137 VHMDNISPVTTNGSLKESLRKYSSIIAVNIFSETG 171
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 9.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 150 IFVGNLSDKTTDADLRPLFEKYGTVVECDIVRN------YGFVHME-NEQVGREAIQNLN 308
+FVGNL+ + + L F G++ IVR+ GF +++ + +G + LN
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 309 -GELVHGQGITIEAAKSRKAPS 371
++ G+ + I AKS K S
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKS 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,291,325
Number of Sequences: 5004
Number of extensions: 22194
Number of successful extensions: 104
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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