Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F04
         (217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   1.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    24   2.4  
SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp...    23   7.2  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    23   7.2  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    23   7.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    22   9.6  

>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 123 VPMASMATLTSKISILFK 70
           +PMA+ AT T K+ +LFK
Sbjct: 539 MPMATDATFTEKLHLLFK 556


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   PGLHDRPSSLSTRHRWRYR 59
           P  +   SSLSTR RWR +
Sbjct: 75  PSKNPTSSSLSTRKRWRQK 93


>SPCC11E10.06c |||RNA polymerase II elongator complex subunit Elp4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 32  IHETPVALPCHIYLNNIEILDVSVAI 109
           IH+ P+ALP   + N+ E  D+S  +
Sbjct: 297 IHKLPLALPFTNHANSNEAGDLSFTV 322


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 35  HETPVALPCHIYLN 76
           H+T ++LPCHI ++
Sbjct: 232 HDTFLSLPCHISMH 245


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 113 RLWQH*HLKSQYYLNKCDTVTPPVS 39
           ++WQ+  L  + +L  C  + PP S
Sbjct: 346 KVWQYVALMKRIFLIDCPGIVPPSS 370


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 62  DTVTPPVSRG*RARPIMQP 6
           +T  PP + G R  P+ QP
Sbjct: 933 ETYHPPTASGTRVPPVQQP 951


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 730,395
Number of Sequences: 5004
Number of extensions: 9637
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)