Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F04
         (217 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0806 + 21654057-21655154,21655728-21655796,21656110-216562...    27   1.6  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    27   2.7  
05_03_0114 + 8539808-8539828,8540327-8541748                           26   3.6  
02_03_0061 + 14582724-14582840,14583360-14584334                       26   3.6  
08_02_0136 - 13034434-13034991,13035999-13036034                       26   4.8  
12_01_0824 + 7601811-7602598,7603690-7605730,7605762-7605767,760...    25   6.3  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     25   8.3  

>07_03_0806 +
           21654057-21655154,21655728-21655796,21656110-21656274,
           21656416-21656589,21659506-21659769,21659957-21660070
          Length = 627

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 23  ELFIHETPVALPCHIYLNNIEILDVSVA 106
           EL IH T +   C + +N++++LDV  A
Sbjct: 240 ELTIHTTSLLTLCVVSINDLQLLDVDAA 267


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 32  IHETPVALPCHIYLNNIEIL 91
           I+ TP  +PCH+  NN+ IL
Sbjct: 83  INSTPRPIPCHLEGNNVVIL 102


>05_03_0114 + 8539808-8539828,8540327-8541748
          Length = 480

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -3

Query: 155 HLFTKVLG*QT---YRWRL--WQH*HLKSQYYLNKCDTVTPPVSR 36
           HLF K LG +     RW    W+  HL   YY +     TPP SR
Sbjct: 232 HLFVKYLGSEDEEPMRWPSGDWEVHHLLHLYYQSFIPNRTPPRSR 276


>02_03_0061 + 14582724-14582840,14583360-14584334
          Length = 363

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 32  IHETPVALPCHIYLNNIEIL 91
           I+ TP  +PCH+  NN+ IL
Sbjct: 159 INTTPRIIPCHLKGNNVGIL 178


>08_02_0136 - 13034434-13034991,13035999-13036034
          Length = 197

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 32  IHETPVALPCHIYLNNIEIL-DVSVAIDAIGTS 127
           I+  P  +PCH+  NN+ IL   +V ++ +  S
Sbjct: 130 INTAPRTIPCHLEGNNVGILYSTTVGVNIVSES 162


>12_01_0824 +
           7601811-7602598,7603690-7605730,7605762-7605767,
           7606142-7606291
          Length = 994

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 41  TPVALPCHIYLNNIEILDVSVAIDAIGTSA 130
           TPV L   +YL  I +L  S A+ + G+ +
Sbjct: 877 TPVGLKHLLYLEEIRVLTASTAVASAGSES 906


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 86  SQYYLNKCDTVTPPVSRG 33
           + +YL  C  + PPVS+G
Sbjct: 120 NDFYLEHCPRIFPPVSKG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,655,206
Number of Sequences: 37544
Number of extensions: 59910
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)