Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F04
         (217 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   1.7  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   2.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   3.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   3.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     20   3.8  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         19   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    19   6.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 201 IILYFYYFFISK 166
           +ILYF YF IS+
Sbjct: 23  LILYFIYFRISR 34


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 163 VLTNKKVIKIENNFCSRI 216
           VL  +K+I + NN C+ +
Sbjct: 15  VLFPEKIIGLHNNMCTSL 32


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +1

Query: 130 YPNTLVNK*NLVLTNKKVIKIENNFCSRI 216
           YPN  +N  N + +   +I++  + C R+
Sbjct: 95  YPNWEMNDINKIDSIINIIRVRVDACDRL 123


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 83  QYYLNKCDTVTPP 45
           +YY +K  T TPP
Sbjct: 528 EYYDSKSSTETPP 540


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 107 WQH*HLKSQYYLNKCDTVTPPVS 39
           WQ    + QYYL++  T  P ++
Sbjct: 173 WQWNEERKQYYLHQFATGQPDLN 195


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 83  QYYLNKCDTVTPP 45
           +YY +K  T TPP
Sbjct: 226 EYYDSKSSTETPP 238


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 46  RCLVDKELGRSCSPG 2
           RCL  +  G SC  G
Sbjct: 84  RCLAQRRKGGSCRNG 98


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 16  IGRALYPRDTGGVTVS 63
           +GR  YP  T  +T+S
Sbjct: 374 VGRYFYPNGTEKMTLS 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,842
Number of Sequences: 438
Number of extensions: 709
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)