Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F03
(259 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 76 9e-16
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 0.54
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 2.2
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 23 5.1
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 5.1
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 23 5.1
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 23 5.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 23 6.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 23 6.7
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ... 23 6.7
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 23 8.9
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 23 8.9
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 75.8 bits (178), Expect = 9e-16
Identities = 36/71 (50%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Frame = +2
Query: 14 LYLFAEANLEA----VQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVH 181
LYLF ++ ++EQ+T +LLER+I NRPHPWGLLITF EL+KN Y FW H ++
Sbjct: 2004 LYLFKSSSNNPQELLIKEQMTTVLLERIICNRPHPWGLLITFTELLKNEDYNFWKHPYIK 2063
Query: 182 CAPEIEKLVSS 214
EI +L S
Sbjct: 2064 RNDEICRLFDS 2074
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.6 bits (56), Expect = 0.54
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = -2
Query: 198 SISGAQ*TNSCDQNLYTGFLISSMNVMSRPHGCGLLTMSL---SSNILVI 58
++ G + +S QN YTG L+ ++N G LLT L S+NI+ I
Sbjct: 349 AMKGLEIRSSLYQNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEI 398
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 128 IELIK-NPVYKFWSHEFVHCAPEIEKLVS 211
+ELI NPV + F+H P++E+L+S
Sbjct: 728 VELIADNPVIRDTIWGFLHKLPDLERLIS 756
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 106 RMRSVDNESLEQHP 65
R RSV+NE L+ HP
Sbjct: 343 RKRSVENEMLKPHP 356
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 113 LLITFIELIKNPVYKFWSHEFVH 181
+LIT EL+ N + FW V+
Sbjct: 479 MLITIGELLTNRIIDFWGERLVN 501
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 125 FIELI---KNPVYKFWSHEFVHCAPEIEKL 205
F+E+I KN + + H+ VH PE+ +L
Sbjct: 564 FLEVISDEKNEEFPAYPHKLVHVRPELVQL 593
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 230 YIIINKKTLIFQFLVHNERTRVTRTC 153
+I+ NK LIFQ L + R + TC
Sbjct: 50 FILHNKNFLIFQELEEDVRLCIPTTC 75
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 121 NEQTPRMRSVDNESLEQHPGDLFLDSFQVRFGEQVQEAL 5
N+ TP R SL +H GD D + +GE + L
Sbjct: 1343 NKSTPEEREAFLRSLLEHDGD---DDHDLTYGELQDDEL 1378
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 90 STDRIRGVCSLHSLN*SRTPYTSSGHTSSF 179
++D++ SL+ + S+ TSS +TSS+
Sbjct: 269 TSDKVNASASLYDRSPSKKDITSSRNTSSY 298
>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 245
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 38 LEAVQEQITRMLLERLIVNR 97
LE++ Q+ R + ERL++NR
Sbjct: 43 LESIGFQVGRKITERLLLNR 62
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 22.6 bits (46), Expect = 8.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -1
Query: 148 GVLDQFNECNEQTPRMRSVDNESL 77
G D F+ N +TP +VD++ L
Sbjct: 298 GRTDSFHSLNTETPSKSTVDDQIL 321
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 113 LLITFIELIKNPVYKFWSHEFVHCAPEIEKLVSSY 217
L+I+ +E F + EF+H +I +++SSY
Sbjct: 341 LVISVLEASIRCAKTFNNLEFLHYCLDISEMISSY 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,073,913
Number of Sequences: 5004
Number of extensions: 18827
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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