Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_F03
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 119 3e-28
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 97 2e-21
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 27 2.1
12_02_0585 + 20824752-20825954,20826141-20826329,20826533-208266... 27 2.7
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198... 27 2.7
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 26 4.8
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485... 26 4.8
04_03_0109 - 11349059-11349222,11349242-11349617 26 4.8
01_06_0490 + 29759801-29759880,29759881-29759980,29760468-297605... 26 4.8
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 25 6.3
04_03_0083 + 10878487-10878714,10878781-10879223,10879267-108794... 25 6.3
12_02_0230 + 15973390-15974645,16002878-16003097 25 8.4
11_06_0237 - 21606240-21606395,21606499-21606706,21607565-216076... 25 8.4
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 25 8.4
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 25 8.4
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 25 8.4
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 25 8.4
06_03_0493 + 21402536-21404599 25 8.4
06_01_0623 + 4536817-4536868,4537129-4537328,4537401-4537609,453... 25 8.4
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 25 8.4
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 119 bits (287), Expect = 3e-28
Identities = 54/68 (79%), Positives = 58/68 (85%)
Frame = +2
Query: 11 LLYLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVHCAP 190
+LYLF+EAN E VQEQITR+LLERLIVNRPHPWGLLITFIELIKNP Y FW+ F CAP
Sbjct: 2405 ILYLFSEANQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAP 2464
Query: 191 EIEKLVSS 214
EIEKL S
Sbjct: 2465 EIEKLFES 2472
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 97.1 bits (231), Expect = 2e-21
Identities = 38/69 (55%), Positives = 54/69 (78%)
Frame = +2
Query: 11 LLYLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVHCAP 190
+L+LF+EA E +Q+QI R++LERL+V RPHPWGL +T +ELIKNP YK WS F+ C P
Sbjct: 1641 ILHLFSEATQEIIQDQIMRVILERLVVRRPHPWGLQMTLVELIKNPRYKLWSRPFIRCGP 1700
Query: 191 EIEKLVSSY 217
+I+K++ +
Sbjct: 1701 QIDKVLIEF 1709
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 10 PPVLVRRSELGSCPGTNHQDVARETHCQQTASVGSAH 120
PP +R S G+ + +DVA T C ++ + H
Sbjct: 338 PPTRMRTSSAGAGDSHSSRDVAESTSCAESPPIPQMH 374
>12_02_0585 +
20824752-20825954,20826141-20826329,20826533-20826690,
20826913-20827009,20827368-20827730,20829225-20829303,
20830180-20830286
Length = 731
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 57 CSWTASKFASANKYRRPSC 1
C+W KF SA KY C
Sbjct: 641 CAWNGGKFGSATKYEWKPC 659
>01_03_0075 -
12218501-12218611,12219028-12219267,12219698-12219815,
12219949-12220016,12220124-12220375,12221362-12221463,
12221734-12221802,12221892-12221987,12222161-12222208,
12222352-12222479,12222818-12222896,12223651-12223797,
12223956-12224022,12224655-12224830,12225588-12225755,
12225879-12225992,12226657-12226722,12227306-12227524,
12228142-12228321,12228481-12228584,12228998-12229277,
12230582-12231004
Length = 1084
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 24 SPKRTWKLSRNKSPGCCSRDSLS 92
SPK+TWK + + P S+D+LS
Sbjct: 593 SPKKTWKTNESLFPCELSKDALS 615
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 192 SGAQ*TNSCDQNLYTGFLISSMNVMSRPHGCGLLTMSLSSNILVICSWTASKFA 31
+G TN+ D+ L TGF I+ ++ PHG +S+ + W + A
Sbjct: 353 TGGGATNTTDRML-TGFAIAMQDLRCEPHGGEKPAARVSAVFRAVSPWEDQQLA 405
>05_03_0249 -
10946993-10947073,10947307-10947432,10948497-10948552,
10949066-10949338,10951434-10951716
Length = 272
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 116 LITFIELIKNPVYKFWSHEFVHCAPEI 196
+I +I I+NPV K+ EFV P +
Sbjct: 191 IIFYIYFIRNPVTKWNQKEFVSVGPSV 217
>04_03_0109 - 11349059-11349222,11349242-11349617
Length = 179
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 1 ARGPPVLVRRSELGSCPGTNHQDVAR 78
AR P+ R G PGT H DVA+
Sbjct: 142 ARALPLDTRTWPRGDVPGTGHTDVAK 167
>01_06_0490 +
29759801-29759880,29759881-29759980,29760468-29760574,
29761305-29761554,29761989-29762111,29762471-29762638,
29762741-29762878,29763206-29763235
Length = 331
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 158 FWSHEFVHCAPEIEKLVS 211
F+ H F H PEI KL+S
Sbjct: 247 FYDHIFSHLQPEIAKLIS 264
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V++Q+ + + I PWG +TF+E
Sbjct: 293 YRMAANELAKVKKQLEELKEKGYIRPSTSPWGAPVTFVE 331
>04_03_0083 +
10878487-10878714,10878781-10879223,10879267-10879423,
10879573-10880433
Length = 562
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 50 QEQITRMLLERLIVNRPHPWGLLIT 124
+EQ+TR + R V +P WG + T
Sbjct: 227 EEQVTRGTIARSPVRKPCSWGTMAT 251
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V+ Q+ +L + I PWG + F+E
Sbjct: 312 YRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 350
>11_06_0237 -
21606240-21606395,21606499-21606706,21607565-21607697,
21607775-21607904,21607999-21608092,21609258-21609652
Length = 371
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +3
Query: 27 PKRTWKLSRNKSPGCCSRDSL-STDR 101
P TWK R K+P R +L STDR
Sbjct: 201 PFGTWKGGREKAPAAFCRKALTSTDR 226
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V+ Q+ +L + I PWG + F+E
Sbjct: 738 YRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 776
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V+ Q+ +L + I PWG + F+E
Sbjct: 228 YRMATNELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 266
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V+ Q+ +L + I PWG + F+E
Sbjct: 760 YRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAPVIFVE 798
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIE 133
Y A L V+ Q+ +L + I PWG + F+E
Sbjct: 846 YRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVE 884
>06_03_0493 + 21402536-21404599
Length = 687
Score = 25.0 bits (52), Expect = 8.4
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 24 SPKRTWKLSRNKSPGCCSRDSLSTDRIRGVCSLHSLN*SR---TPYTSSGHTSSFIVHQK 194
S K LS K+ G SL I+G+C++H L+ ++ T SG ++I++
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473
Query: 195 LKN*C 209
+ + C
Sbjct: 474 MMDAC 478
>06_01_0623 +
4536817-4536868,4537129-4537328,4537401-4537609,
4538531-4538954
Length = 294
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 7 GPPVLVRRSELGSCPGTNHQDVAR 78
GP V+ + G+C GT H DVA+
Sbjct: 219 GPGVVTKH---GTCAGTGHTDVAK 239
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 17 YLFAEANLEAVQEQITRMLLERLIVNRPHPW 109
+L + A E ++ T MLLERL + PW
Sbjct: 416 FLSSVAMEEDIRSNTTVMLLERLCESAERPW 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,818,550
Number of Sequences: 37544
Number of extensions: 119160
Number of successful extensions: 366
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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