Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F03
         (259 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...   102   3e-23
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    29   0.46 
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    29   0.46 
AL132846-4|CAB60347.1|  328|Caenorhabditis elegans Hypothetical ...    27   1.8  
AF039047-12|AAM15590.1|  226|Caenorhabditis elegans Hypothetical...    26   3.2  
U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    25   5.6  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...    25   9.8  
U64847-8|AAQ91904.1|  558|Caenorhabditis elegans Acyltransferase...    25   9.8  
U64847-7|AAB04876.1|  718|Caenorhabditis elegans Acyltransferase...    25   9.8  

>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score =  102 bits (245), Expect = 3e-23
 Identities = 43/64 (67%), Positives = 51/64 (79%)
 Frame = +2

Query: 14   LYLFAEANLEAVQEQITRMLLERLIVNRPHPWGLLITFIELIKNPVYKFWSHEFVHCAPE 193
            LYLF  +  + +QEQITR+L ERL+  RPHPWGLLITFIELIKNP Y FW +EF  CAPE
Sbjct: 2394 LYLFKNSTNDTIQEQITRILFERLVALRPHPWGLLITFIELIKNPTYNFWRYEFTSCAPE 2453

Query: 194  IEKL 205
            I++L
Sbjct: 2454 IQRL 2457


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 145 VLDQFNECNEQTPRMRSVDNESLEQHPGD 59
           ++DQ N C+E    MR + ++++ +H GD
Sbjct: 390 IIDQLNGCSEAAKDMRLIISQNIFEHRGD 418


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 145 VLDQFNECNEQTPRMRSVDNESLEQHPGD 59
           ++DQ N C+E    MR + ++++ +H GD
Sbjct: 390 IIDQLNGCSEAAKDMRLIISQNIFEHRGD 418


>AL132846-4|CAB60347.1|  328|Caenorhabditis elegans Hypothetical
           protein Y43D4A.6 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 174 NSCDQNLYTGFLISSMNVMSRPHGCGLLTMSLSSNILVICSWTASKFA 31
           N    N   G+L   M+ +   HGCG++   +  + L+I S  A K A
Sbjct: 99  NGMPVNQVKGYLKQLMSGLKYIHGCGIVHRDIKPDNLLINSSDALKIA 146


>AF039047-12|AAM15590.1|  226|Caenorhabditis elegans Hypothetical
           protein K11D12.12 protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -1

Query: 160 ELVYGVLDQFNECNEQTPRMRSVDNESLEQHPGDLFLDSFQVRF 29
           +L+ GVLDQ +  N +       +   + + PGD   D+  VR+
Sbjct: 43  KLIRGVLDQKSRFNRELMNREKYETPYIVELPGDHPADTEHVRY 86


>U88180-7|AAB42297.2|  789|Caenorhabditis elegans Hypothetical
           protein T27A3.2 protein.
          Length = 789

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 52  LDSFQVRFGEQVQEALV 2
           +DSFQ R+GEQ  E LV
Sbjct: 340 VDSFQTRYGEQGLETLV 356


>Z81474-5|CAB03906.1|  361|Caenorhabditis elegans Hypothetical
           protein C18D4.9 protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 156 LYTGFLISSMNVMSRP 109
           L+ GFLIS +NV S+P
Sbjct: 77  LFIGFLISEINVCSKP 92


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 139 DQFNECNEQTPRMRSVDNESLEQHPGDLFLDSFQVRFGEQVQEAL 5
           D F E +E T   +++ +   E+   ++++D F   FG+ V   +
Sbjct: 47  DAFTETHE-TQESKNIAHGEHEEDVSNIYVDDFSKEFGDTVSSVM 90


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 79  ETHCQQTASVGSAHYIH*TDQEPRIQVLVTRVRSLCTRN 195
           E+ C+ T S G+  YIH T    +  +      S C+ N
Sbjct: 266 ESFCRDTCSRGAPEYIHRTSFLEQTPITGCSQTSACSHN 304


>Z81514-6|CAB62802.1|  712|Caenorhabditis elegans Hypothetical
           protein F26F2.7 protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -2

Query: 135 SSMNVMSRPHGCGLLTMSLSSNILVICSWTASKFASANKYR 13
           +++NV    H   +L + +S+N + +      KFA AN ++
Sbjct: 328 TTLNVAFNSHNQTVLAIMMSNNFVELKGSVFKKFAKANLFQ 368


>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 7   GPPVLVRRSELGSC-----PGTNHQDVARETHCQQTASVGSAHYI 126
           GP +L+R  +  S      PGT +Q+V  E H   +  +    ++
Sbjct: 757 GPKILLRHPKAASTINEFGPGTTYQNVISEEHATSSQKIKKVIFV 801


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +1

Query: 7   GPPVLVRRSELGSC-----PGTNHQDVARETHCQQTASVGSAHYI 126
           GP +L+R  +  S      PGT +Q+V  E H   +  +    ++
Sbjct: 757 GPKILLRHPKAASTINEFGPGTTYQNVISEEHATSSQKIKKVIFV 801


>U64847-8|AAQ91904.1|  558|Caenorhabditis elegans
           Acyltransferase-like protein 6,isoform b protein.
          Length = 558

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 138 ISSMNVMSRPHGCGLLTMSLSSNILVICSWTASKF 34
           + ++ ++SRP G  L    +  + L +C W   +F
Sbjct: 354 VIALTIVSRPSGTKLSIDQIVEDALSLCDWLQFEF 388


>U64847-7|AAB04876.1|  718|Caenorhabditis elegans
           Acyltransferase-like protein 6,isoform a protein.
          Length = 718

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 138 ISSMNVMSRPHGCGLLTMSLSSNILVICSWTASKF 34
           + ++ ++SRP G  L    +  + L +C W   +F
Sbjct: 514 VIALTIVSRPSGTKLSIDQIVEDALSLCDWLQFEF 548


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,033,963
Number of Sequences: 27780
Number of extensions: 112670
Number of successful extensions: 320
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,740,198
effective HSP length: 64
effective length of database: 10,962,278
effective search space used: 230207838
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)