Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_F02
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            25   0.46 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.3  
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   4.3  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.5  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   10.0 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   10.0 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   10.0 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   10.0 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   10.0 

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 447 LDRPLRPKNS*GATQSSFSHVCTVMI 370
           LD  ++PK+  G+   S  H+CTV++
Sbjct: 25  LDCSIKPKDHNGSIYWSMYHLCTVVL 50


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 97  RNNNAFLVKKANIKKPFSKEPNNVTNLNSYRYNGLIHKK 213
           R N+  L+KK N   PF K P  +T    +  N +  K+
Sbjct: 8   RINSCDLLKKRNENDPFLKRP--ITGDEKWVVNNIKRKR 44


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 373 DLPLAISWL 347
           DLPL+ISWL
Sbjct: 638 DLPLSISWL 646


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 307 RRPFKAGARRSLFKAKRLLKANHYRTDVTKATLRRASAILRSQ 435
           +RP  A +   L + KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQ 63


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 294 KEHYPSSIQSWSEEV 338
           K +YPS I  W +++
Sbjct: 62  KNNYPSDIDQWHDKI 76


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  SFSN*NYKMSSHLNWMIIRNNN 108
           S SN NYK S++ N+    NNN
Sbjct: 317 SLSN-NYKYSNYNNYNNYNNNN 337


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 294 KEHYPSSIQSWSEEV 338
           K +YPS I  W +++
Sbjct: 62  KNNYPSDIDQWHDKI 76


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 294 KEHYPSSIQSWSEEV 338
           K +YPS I  W +++
Sbjct: 62  KNNYPSDIDQWHDKI 76


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  SFNSKNYNNTIHN 23
           ++N+ NYNN  +N
Sbjct: 328 NYNNNNYNNNYNN 340


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  SFNSKNYNNTIHN 23
           ++N+ NYNN  +N
Sbjct: 337 NYNNNNYNNNYNN 349



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  SFNSKNYNNTIHN 23
           ++N+ NYNN  +N
Sbjct: 332 NYNNNNYNNNNYN 344


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 307 RRPFKAGARRSLFKAKRLLKANHYRTDVTKATLRRASAILRSQ 435
           +RP  A +   L + KR    N Y T+  +  L R   +  +Q
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQ 63


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  SFNSKNYNNTIHN 23
           ++N+ NYNN  +N
Sbjct: 97  NYNNNNYNNNNYN 109


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 61  SFNSKNYNNTIHN 23
           ++N+ NYNN  +N
Sbjct: 97  NYNNNNYNNNNYN 109


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 247 PFCQDSQRHRRLSYGSSHCIYTS*G*SHCWVLC 149
           PFC+ + +   L      C  TS G   C ++C
Sbjct: 85  PFCEKNPKLGILGTHGRQCNDTSIGVDGCDLMC 117


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 247 PFCQDSQRHRRLSYGSSHCIYTS*G*SHCWVLC 149
           PFC+ + +   L      C  TS G   C ++C
Sbjct: 86  PFCEKNPKLGILGTHGRQCNDTSIGVDGCDLMC 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,110
Number of Sequences: 438
Number of extensions: 2309
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)