Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E23
(426 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 141 5e-35
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 81 9e-17
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 77 9e-16
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 72 3e-14
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 28 0.70
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 0.70
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C... 27 0.92
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 27 1.2
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 27 1.2
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.7
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 25 3.7
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 25 4.9
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe... 25 4.9
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 141 bits (341), Expect = 5e-35
Identities = 60/81 (74%), Positives = 70/81 (86%)
Frame = +2
Query: 182 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYV 361
MREIVH+QAGQCGNQ+GA FW I+DEHG+D G YHG S+ Q ER+NVY+NEA+GG YV
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60
Query: 362 PRAVLVDLEPGTMDSVRSGPF 424
PRAVLVDLEPGTMD+V+SG F
Sbjct: 61 PRAVLVDLEPGTMDAVKSGKF 81
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 80.6 bits (190), Expect = 9e-17
Identities = 33/80 (41%), Positives = 55/80 (68%)
Frame = +2
Query: 185 REIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGTYVP 364
REI+ +QAGQCGNQIG++FW+ + EHGI P G + ++R +V++ ++ Y+P
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62
Query: 365 RAVLVDLEPGTMDSVRSGPF 424
RA+L+DLEP ++++ S +
Sbjct: 63 RAILIDLEPRVVNNILSDTY 82
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 77.4 bits (182), Expect = 9e-16
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 182 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLER--INVYYNEASGGT 355
MREI+ + GQ G QIG WE+ EHGI P G + ++ Q + +++E G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 356 YVPRAVLVDLEPGTMDSVRSGPF 424
YVPR++ VDLEP +D VR+GP+
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPY 83
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 72.1 bits (169), Expect = 3e-14
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +2
Query: 182 MREIVHVQAGQCGNQIGAKFWEIISDEHGIDPTG------AYHGDSDLQLERINVYYNEA 343
MRE++ V GQ G QIG WE+ EHGI P G H ++ + +++E
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 344 SGGTYVPRAVLVDLEPGTMDSVRSGPF 424
G +VPR++ VDLEP +D VR+GP+
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPY 87
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 27.9 bits (59), Expect = 0.70
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = +3
Query: 201 SRPDNAETRSELSSGRSSLMNMELIPLAHTMVTLTYSWSVLMCITMKHPEALMYLAPFLL 380
++ D + +L+ G + L ++I + T VTL L + P+ L+ AP L
Sbjct: 157 AKEDGRDAIIDLTRGLADLCTKKVI--SSTQVTLELIDKELKESVIPEPDLLIIFAPLLK 214
Query: 381 TSSLAPWTL 407
PW L
Sbjct: 215 LQGFPPWQL 223
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 0.70
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 280 SGINSMFIRDDLPELSSDLVSALSGLDVDDFPHLYLCE 167
+ I+ + + D L +L S L++A++ D DD +CE
Sbjct: 345 NSISGLSVIDVLRDLGSHLINAVNSFDADDQTWYNMCE 382
>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 27.5 bits (58), Expect = 0.92
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = -1
Query: 267 PCSSEMISQNLA-PIWFPHCPAWTW 196
P SSE I Q LA + PH WTW
Sbjct: 263 PSSSEEIYQKLANEVDVPHAALWTW 287
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 103 FNRPDRTINVTREILSNNFY*LHINKDEGNRPRPGRTMRKP 225
F+RP T NV L+N F L NKD + P T++ P
Sbjct: 203 FSRPPPTPNVAGLSLNNFFCPLPENKDNKSSPFGSATVQTP 243
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 27.1 bits (57), Expect = 1.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 221 NQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERI 322
N++G E+++++ +DPT A + DLQ++ +
Sbjct: 133 NELGENEEEVLTEQKQLDPTLAAKKELDLQMDAV 166
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +2
Query: 23 KLWIPRAAGIRHSGWAVRLEFCLT-FKSSTDLIELSTLLEKYYQIIFINFT*IKMREIVH 199
K+W+ + + GW V++EF ++ FK+ ++++E S +E Y + I + ++
Sbjct: 327 KMWLIHSF---NKGWPVKIEFFVSFFKNFSNIVEGS--MEVYSAYLHIIRDHYNLSDLAD 381
Query: 200 VQA 208
VQA
Sbjct: 382 VQA 384
>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 234 LSSGRSSLMNMELIPLAHTMVTLTYSWSVLMCITMKHPE 350
+SSG S+L E++P+ + ++ Y W ++ HP+
Sbjct: 22 ISSGESAL---EVVPVINRLLENDYKWDTVIATKDVHPK 57
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 4.9
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -1
Query: 225 WFPHCPAWTWTI 190
WF HCP WT+
Sbjct: 7 WFIHCPPLQWTL 18
>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 243
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 99 LKVRQNSKRTAQPLCRIPAARGIHSLE 19
L+V T P+C + A RG++SL+
Sbjct: 81 LRVFAKDVYTDSPICNLSARRGLYSLQ 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,576
Number of Sequences: 5004
Number of extensions: 36842
Number of successful extensions: 112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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