Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E22
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0106 - 13460882-13462086,13463452-13463629 28 3.2
01_06_0373 - 28841462-28842850 28 3.2
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13... 27 4.3
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 27 4.3
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589... 27 4.3
06_03_0400 - 20420257-20421837 27 7.5
02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790 27 7.5
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 26 9.9
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 26 9.9
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 127 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 38
H+L V+ PA R R + PL P P R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 121 LWVVQSPPADRAVRLSREPLEP 56
LWVV+SPP+D + +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307
>07_01_0021 -
133549-133628,133780-133824,133850-133858,134513-134656,
140098-140391,141324-141908,142034-142198,142364-142406
Length = 454
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 404 LFMRCHVLIVINECCESRTAENIV 333
L CH + +NECC SRT +N +
Sbjct: 185 LLEACHKIDPVNECC-SRTCQNAI 207
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 27.5 bits (58), Expect = 4.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 390 SCIDCNK*VLRVTNCGEHCSSARCSDVAEQRRG 292
SC+DC++ + + TN C+ + + V E+ +G
Sbjct: 154 SCVDCHQRIKKPTNALYCCTMCKLNQVQEEDQG 186
>01_05_0416 +
21956050-21956512,21958001-21958065,21958772-21958933,
21959006-21959107
Length = 263
Score = 27.5 bits (58), Expect = 4.3
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = -3
Query: 232 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 53
++L L +R + HRS+ ++ G S + L +SP R SR P
Sbjct: 2 QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61
Query: 52 PPIQRESTGNAYRRP 8
PP ++ST + RRP
Sbjct: 62 PP--KDSTARSGRRP 74
>06_03_0400 - 20420257-20421837
Length = 526
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 163 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 68
P R+GM I+Y W + PA+ ++ R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445
>02_01_0795 + 5959896-5960061,5960415-5960700,5961664-5961790
Length = 192
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 123 SCGLYSLRQLIGLFV-CHGSRSSQGHQYNESQREMHIAGPSC 1
S G+ R+++G C+G + GH+ E E+H G C
Sbjct: 32 SFGMAPTRRVLGASAPCYGKSLADGHEEEEFTIELHHGGFFC 73
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 106 SPPADRAVRLSREPLEPGPPIQRESTGN 23
SPP R S EP + PP++R++ G+
Sbjct: 295 SPPRRRTRHDSHEPKDKLPPLKRQALGD 322
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 103 PPADRAVRLSREPLEPGPPIQRESTGNAY 17
PP+D R EP P PP +G AY
Sbjct: 316 PPSDYVRRRLLEPPRPPPPAAVNPSGKAY 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,122,222
Number of Sequences: 37544
Number of extensions: 177418
Number of successful extensions: 451
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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