Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E21
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   0.76 
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    24   2.3  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   3.1  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    23   7.1  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    23   7.1  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    22   9.4  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    22   9.4  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 0.76
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 73  FVYKQYFYYSFLSNTPSFLYLTL 5
           ++Y  +F+YSFL +   F Y++L
Sbjct: 80  YIYIYFFFYSFLCSPYLFKYISL 102


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 85  TKRQFVYKQYFYYSFLSNTPS 23
           T + +  KQYFY+  L + PS
Sbjct: 374 TSKFYPLKQYFYFDSLESLPS 394


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 103 CE*IMKTKRQFVYKQYFYYSFLSNTPSFLYL 11
           C   +K+    +Y  YFY   ++ TP   Y+
Sbjct: 204 CSRDVKSLLDHLYNSYFYQLLMTKTPVVFYV 234


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 168 IIYQNFTESYSLIEKSRISFGTVN 97
           IIY N T+   +++ + +SF T +
Sbjct: 820 IIYSNDTDESDIVKNTFVSFNTTS 843


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 150 TESYSLIEKSRISFGTVNKL*KPNVSLSISN 58
           T++YSLIE+ R+ +  +  L  P+ S  ++N
Sbjct: 121 TDAYSLIERDRL-YDWLFSLKNPDGSFRVNN 150


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 3   TRVRYKKDGVLLR 41
           TR++Y  DG+LLR
Sbjct: 187 TRIKYLTDGMLLR 199


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 132 IEKSRISFGTVNKL*KPNVSLSISNTFIIH 43
           I +S   F T+N++  P +S  I ++ I+H
Sbjct: 395 IYESTTVFSTLNEIIWPIISFVILSSIIVH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,274
Number of Sequences: 5004
Number of extensions: 9227
Number of successful extensions: 20
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)