Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E21
         (176 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AL032663-9|CAA21764.2|  187|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    25   9.4  

>Z81553-8|CAB04497.1|  408|Caenorhabditis elegans Hypothetical
           protein F56H6.8 protein.
          Length = 408

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 10  LDTKKMEYCSEMNNKSIAYRQTDVWFS 90
           L++ +++YC+ M  KS     T  W+S
Sbjct: 242 LNSNRVDYCTAMATKSGGAHSTGSWYS 268


>AL032663-9|CAA21764.2|  187|Caenorhabditis elegans Hypothetical
           protein Y75B12B.1 protein.
          Length = 187

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 28  EYCSEMNNKSIAYRQTDVWFS*F 96
           ++C  + N+S+  R+ D W++ F
Sbjct: 132 DFCDALGNESMGVREFDFWWNRF 154


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 156 NFTESYSLIEKSRISFGTVNKL*KPNVSLSISNTFI 49
           N+   Y      R     +  L  PN+ L ISNTF+
Sbjct: 43  NYPPGYFTENSCREELERIMSLPTPNLRLGISNTFV 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,491,545
Number of Sequences: 27780
Number of extensions: 47762
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 12,740,198
effective HSP length: 39
effective length of database: 11,656,778
effective search space used: 221478782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)