Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E21
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    19   5.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    19   7.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.3  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               18   9.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    18   9.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    18   9.6  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 33  ILHLFCI 13
           ILHLFC+
Sbjct: 283 ILHLFCL 289


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 YQNFTESYSLIEKSR 118
           +Q+F+ES+ ++   R
Sbjct: 189 FQDFSESFQILHAGR 203


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 YQNFTESYSLIEKSR 118
           +Q+F+ES+ ++   R
Sbjct: 189 FQDFSESFQILHAGR 203


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -3

Query: 162 YQNFTESYSLIEKSR 118
           +Q+F+ES+ ++   R
Sbjct: 189 FQDFSESFQILHAGR 203


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 70 VYKQYFYYSFLSNTPSFLY 14
          ++K Y ++  L  T  FLY
Sbjct: 1  MFKNYHFFFILVITLIFLY 19


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 102 VNKL*KPNVSL 70
           +NK+ KPN+ +
Sbjct: 252 INKIDKPNIDI 262


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -3

Query: 168 IIYQNFTESYSLIEKSRISF 109
           I+YQN  ES+  +  +   +
Sbjct: 215 IVYQNSDESFHRLTSNTFDY 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,481
Number of Sequences: 438
Number of extensions: 815
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)