Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E20
(225 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 1.3
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 23 4.1
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 23 4.1
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 23 4.1
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 23 5.4
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.2
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ... 23 7.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 23 7.2
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 23 7.2
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 22 9.5
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 22 9.5
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.0 bits (52), Expect = 1.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 154 VFIPTKLIVKFINSNFLLKRHF*LV*VSTCKIFNYKSFNVVGSW 23
VF KL+ F +NF L +F C +Y S N G+W
Sbjct: 600 VFAIEKLVNFFSMANFFLAFYF------VCNATSYSSLNPYGNW 637
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -2
Query: 221 IIQNFYYIYQLIFVSY 174
+I FY+I LIF SY
Sbjct: 487 VIYRFYFISALIFTSY 502
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 176 YHLSKALGIYSDKINSQIYKF 114
+H++K + SD+I S+I F
Sbjct: 117 FHMNKTISEISDRITSEIISF 137
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 93 CLFNKKLEFINLTINFVGI 149
CLF KLEF N +N +
Sbjct: 132 CLFCNKLEFFNADMNAASV 150
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 215 QNFYYIYQLIFVSYHLSKALGIYSD 141
Q+ + ++IF+S H KA IY D
Sbjct: 550 QDLLAMPEMIFISEHSQKAAIIYED 574
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 5 EDSLAIPRTDYVERFVIKNF 64
+DS P TD+ RFV +F
Sbjct: 192 DDSDLTPHTDFTNRFVDSDF 211
>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 695
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 62 FTRRYLNQLKMSF*QEIRIYKF 127
F R YL +++ F +++R Y F
Sbjct: 416 FKRHYLVDIQLPFAEDVRPYSF 437
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 22.6 bits (46), Expect = 7.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 176 YHLSKALGIYSDKINSQIYKF*FLVKKTFLIGLGIY 69
++L K L + K+ I+K V +T L G+Y
Sbjct: 328 HYLGKELNLMDPKVPEDIFKTHLEVARTGLGASGVY 363
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 194 QLIFVSYHLSKALGIYSDKIN 132
Q+IFVS + +K+ Y +KIN
Sbjct: 52 QIIFVSNNSTKSRETYMNKIN 72
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 22.2 bits (45), Expect = 9.5
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 5 EDSLAIPRTD-YVERFVIKNFTRRYLNQLK 91
E I TD Y+ R + FTRR NQ+K
Sbjct: 122 EADQTIKTTDGYLCRVFVIGFTRRRANQVK 151
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/17 (52%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = -3
Query: 52 YKS-FNVVGSWYCQRIL 5
+KS FN++GS+Y R+L
Sbjct: 278 FKSVFNILGSFYTMRLL 294
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,319
Number of Sequences: 5004
Number of extensions: 13614
Number of successful extensions: 29
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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