Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E20
         (225 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0564 - 4447078-4448519,4449465-4449711                           29   0.38 
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836           27   2.0  
10_08_0002 - 13986969-13989338                                         26   3.6  
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538...    26   4.7  
07_01_0584 + 4345134-4345237,4346165-4346267,4346397-4346466,434...    25   6.2  

>11_01_0564 - 4447078-4448519,4449465-4449711
          Length = 562

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 11  SLAIPRTDYVERFVIKNFTRRYLNQLKMSF 100
           S+ IPR   +    +KNFT  Y NQ+ +SF
Sbjct: 437 SVVIPRNTAIPTKKVKNFTTLYDNQINVSF 466


>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
          Length = 526

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 2   HEDSLAIPRTDYVERFVIKNFTRRYLNQLKMSF 100
           H  S+ IPR  ++     + +T  Y NQ+++SF
Sbjct: 387 HTMSVVIPRNTFIPTKNTRRYTTLYDNQIRVSF 419


>10_08_0002 - 13986969-13989338
          Length = 789

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 143 RNKYLVLLISDMRRKLIGICNKN 211
           R+K+  LL+SD R+K+ GI  K+
Sbjct: 407 RDKFYQLLLSDCRKKIDGIFTKD 429


>10_07_0056 +
           12451510-12451554,12453099-12453149,12453754-12453804,
           12453879-12453944,12454011-12454072,12454459-12454537,
           12454618-12454722,12454824-12454934,12455017-12455154,
           12455298-12455399,12455400-12455474,12455574-12455694,
           12455768-12455922,12456004-12456078,12456160-12456363,
           12457105-12457221
          Length = 518

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 137 FCRNKYLVLLISDMRRKLIGICNKNF 214
           FC+N+ LVLL  ++ ++ I + NK F
Sbjct: 283 FCKNEGLVLLADEVYQENIYVDNKKF 308


>07_01_0584 +
           4345134-4345237,4346165-4346267,4346397-4346466,
           4346552-4346590,4346684-4346801,4346894-4346951,
           4347031-4347095,4347281-4347341,4347678-4347779,
           4348005-4348070,4348399-4348443,4348540-4348797,
           4349289-4349501,4350103-4350411,4350461-4350613
          Length = 587

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  LAIPRTDYVERFVIKNFTRRYLNQLK 91
           LA+PR     R +I +F +R+L +L+
Sbjct: 553 LALPRCQETNRKIIASFVQRFLRKLQ 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,724,875
Number of Sequences: 37544
Number of extensions: 62787
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)