Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E20
         (225 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009676-1|AAH09676.1|  347|Homo sapiens histone deacetylase 11 ...    28   4.7  
AK025890-1|BAB15272.1|  347|Homo sapiens protein ( Homo sapiens ...    28   4.7  

>BC009676-1|AAH09676.1|  347|Homo sapiens histone deacetylase 11
           protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   DSLAIPRTDYVERFVIKNFTRRYLNQLKMSF 100
           DS+ +   +  E  ++   TRRYLN+LK SF
Sbjct: 57  DSMLVEAREASEEDLLVVHTRRYLNELKWSF 87


>AK025890-1|BAB15272.1|  347|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ22237 fis, clone HRC02058. ).
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 8   DSLAIPRTDYVERFVIKNFTRRYLNQLKMSF 100
           DS+ +   +  E  ++   TRRYLN+LK SF
Sbjct: 57  DSMLVEAREASEEDLLVVHTRRYLNELKWSF 87


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,114,163
Number of Sequences: 237096
Number of extensions: 403731
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)