Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E19
(453 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal pro... 198 2e-51
U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcript... 29 1.2
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z69787-6|CAA93637.1| 341|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical... 28 2.8
U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical pr... 27 6.4
AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical ... 27 6.4
Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z69634-5|CAA93456.1| 731|Caenorhabditis elegans Hypothetical pr... 27 8.4
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 27 8.4
AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein. 27 8.4
AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical... 27 8.4
AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast m... 27 8.4
AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast m... 27 8.4
>AF038611-9|AAB92041.2| 180|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 20 protein.
Length = 180
Score = 198 bits (483), Expect = 2e-51
Identities = 86/146 (58%), Positives = 116/146 (79%), Gaps = 1/146 (0%)
Frame = +2
Query: 17 KAKGE-LKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 193
KA GE L EY V+GRK+P+E EP P++KM+IF+ + ++AKSRFWYF+ L++ KK GE
Sbjct: 4 KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63
Query: 194 IVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 373
I+SIK++ EK+P +KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64 ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123
Query: 374 AHSIQIIKVEVIKAAACRRPQVKQFH 451
A I I+KV+ +KA +R +K FH
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFH 149
>U29536-2|AAA68790.1| 759|Caenorhabditis elegans Brf (transcription
factor) homologprotein 1 protein.
Length = 759
Score = 29.5 bits (63), Expect = 1.2
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +2
Query: 5 EAKMKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFK-K 181
EA ++ K + V ++PS +EP P+ + P + KSR+ LK K K
Sbjct: 673 EAPLQVKTSSSDPIVTSTEVPSVAEPPAPIQNVEEAKP-IVPVKSRYAKAKPNLKPIKQK 731
Query: 182 TTGEIVSIKEIPEKSP 229
T ++V++ E P
Sbjct: 732 TAVDVVTVGEGESSEP 747
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical protein
C35C5.6 protein.
Length = 1224
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 225 LFSGISLM-DTISPVVFLNFFNCLKKYQKRDFATIGSGEKILI 100
L S +SL+ + P + L+FF K+Y D T+G G+ + +
Sbjct: 1080 LLSSVSLLKQLVLPAISLDFFVNGKQYVSEDDVTVGIGQFVTV 1122
>Z69787-6|CAA93637.1| 341|Caenorhabditis elegans Hypothetical
protein C44C10.7 protein.
Length = 341
Score = 28.3 bits (60), Expect = 2.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 188 GEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGG 325
G I+ + +PVKI +FGI R+ +R G H + RD+ G
Sbjct: 184 GNILFASRLTPTAPVKIVDFGIGRRFANRRG-HPIPSPSRDIDFLG 228
>AL132860-14|CAB60497.1| 619|Caenorhabditis elegans Hypothetical
protein Y56A3A.16 protein.
Length = 619
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +2
Query: 5 EAKMKAKGELKEYEVIGRKLPSESEPK-PPLYKMRIFSPDPIVAKSRFWY 151
E + G +E ++ PS S P PP Y+ + IV S FW+
Sbjct: 66 EEDLNLPGTSEENSLLSPDSPSSSTPNFPPQYESQNLKESVIVRNSIFWF 115
>U42833-5|AAA83580.1| 444|Caenorhabditis elegans Hypothetical
protein ZK430.7 protein.
Length = 444
Score = 27.1 bits (57), Expect = 6.4
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -3
Query: 298 TVHIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFT 188
+++++DTR + + T + N+ + WN ++ YNFT
Sbjct: 217 SIYVLDTRQDVPLKKVTMKMRPNK-ISWNPMEAYNFT 252
>AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical
protein Y73C8B.3 protein.
Length = 308
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 158 RQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYR 307
R+L KF+ +G+ V + + E S FG + + G HN ++ R
Sbjct: 8 RKLVKFETESGKKVELDAVYEDSLTSGSPFGTVVAFHGSPGSHNDFKYIR 57
>Z92827-4|CAB07323.1| 722|Caenorhabditis elegans Hypothetical
protein C29F7.5 protein.
Length = 722
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 20 AKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDPIVAKSR 142
AKG +K IG+K+ E PK P + + F+ KS+
Sbjct: 146 AKGTIKRSAPIGKKVQKEKVPKNPKKEKKDFTGGDKKKKSK 186
>Z69634-5|CAA93456.1| 731|Caenorhabditis elegans Hypothetical
protein B0001.7 protein.
Length = 731
Score = 26.6 bits (56), Expect = 8.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 167 KKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVG 322
KKF TGE + + EK K +W S VH ++ ++ +L+VG
Sbjct: 506 KKFSSYTGESLEGHALVEKIMAHAKTGILWFFDNYNSSVHFIFDDF-ELNVG 556
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 170 KFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAV 331
K KK E K +I N W+R+ G+ + +EY+D GG++
Sbjct: 235 KLKKKKSVTCDEAEFSGKKKKEIIN--AWIRHVLSIGIEGLKKEYQDSPNGGSI 286
>AF239999-1|AAF63495.1| 203|Caenorhabditis elegans MDF-2 protein.
Length = 203
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 98 KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
K++ F DP++ + +W RQLK+ E V KE+ E+
Sbjct: 59 KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98
>AC087081-11|AAK66034.2| 328|Caenorhabditis elegans Hypothetical
protein Y82E9BL.7 protein.
Length = 328
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Frame = +2
Query: 230 VKIKNFGIWLRYESR---SGVHNMYR 298
V +K+FGI LRY S+ S VH Y+
Sbjct: 121 VAVKDFGILLRYASKLHISSVHTCYK 146
>AC084158-32|AAM15619.1| 116|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform b
protein.
Length = 116
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 98 KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
K++ F DP++ + +W RQLK+ E V KE+ E+
Sbjct: 59 KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98
>AC084158-31|AAK68576.1| 203|Caenorhabditis elegans Mad (yeast
mitosis arrest deficient)related protein 2, isoform a
protein.
Length = 203
Score = 26.6 bits (56), Expect = 8.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 98 KMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVSIKEIPEK 223
K++ F DP++ + +W RQLK+ E V KE+ E+
Sbjct: 59 KLQAFM-DPLLQQVEYWLAKRQLKRLVMVISE-VKTKEVVER 98
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,797,482
Number of Sequences: 27780
Number of extensions: 196558
Number of successful extensions: 658
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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