Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E18
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 52 1e-08
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 52 1e-08
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 52 1e-08
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 52 1e-08
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 52 1e-08
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 52 1e-08
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 52 1e-08
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 52 1e-08
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 52 1e-08
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 52 1e-08
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 52 1e-08
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz... 27 0.34
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 1.4
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 24 2.4
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 23 5.5
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 23 7.3
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 22 9.6
SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo... 22 9.6
SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|c... 22 9.6
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 52.0 bits (119), Expect = 1e-08
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 5 EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQK-SDSGWVPLGFFSKKLN 181
+A E+ K L + +L H + + + TDASD A+GAVL QK D + P+G++S K++
Sbjct: 684 QAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMS 743
Query: 182 NAQRKYS 202
AQ YS
Sbjct: 744 KAQLNYS 750
>SPBC839.06 |cta3||P-type ATPase, calcium transporting
Cta3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1037
Score = 27.1 bits (57), Expect = 0.34
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 191 VERCSVSSRKILEEPSLNLIFA 126
+ERCS S+ LEEP LI A
Sbjct: 527 LERCSTSNGSTLEEPDRELIIA 548
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 1.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 61 KSTSTSSHHDRCLRQCYRRSVAAKIRFRLGSSRIFLEETEQRS 189
KST+ + HD CL SVA +I SR L+ E++S
Sbjct: 991 KSTNVVAIHDFCLTLVQSFSVADRIGSINQCSRFCLKSLEEQS 1033
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 2.4
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 143 GWVPLGFFSKKLNNAQRK---YSPY 208
GW+ +GF S K+ N++ K + PY
Sbjct: 76 GWLAIGFLSYKIANSRLKLNIWDPY 100
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +2
Query: 62 NPRAHLAIMTDASDSAIGAVLQQKSDSGWVPL 157
NP +A++T ++D+ + ++ S S +PL
Sbjct: 381 NPAEKVALLTSSADNGVYELVNVSSRSNSLPL 412
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 82 HHDRCLRQCYRRSVAA 129
HHD +RQ R VAA
Sbjct: 381 HHDWAVRQAIREEVAA 396
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 22.2 bits (45), Expect = 9.6
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +2
Query: 41 ATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSPY 208
+T A +PR H ++ S+++ + S VPL + LN R S Y
Sbjct: 662 STPKASLSPRVHKSMTYSPSEASPLYANKSPKSSTMVPLMKYKSGLNEGMRTSSIY 717
>SPBC4C3.07 |||translation initiation factor
eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 41 ATLLAHPNPRAHLAIMTDAS 100
A L +P+P HL + TD S
Sbjct: 132 APLGTYPHPCVHLTVNTDVS 151
>SPBC1271.06c |mug96||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 152 PLGFFSKKLNNAQRK 196
P FF KKLNN +K
Sbjct: 18 PFVFFFKKLNNTLKK 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,669
Number of Sequences: 5004
Number of extensions: 10854
Number of successful extensions: 41
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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