Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E18
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    39   4e-04
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    39   4e-04
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    39   4e-04
Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical pr...    27   1.8  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    27   1.8  
U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical p...    27   2.4  
U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic ...    25   7.4  
AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic ...    25   7.4  
AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic ...    25   7.4  
U00031-11|AAK18868.1|  194|Caenorhabditis elegans Hypothetical p...    25   9.7  
AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical ...    25   9.7  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 8    AFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFF 166
            AF++ K  +    +LA P+  A L       I TDAS   IGAVL Q+   G   P+ F 
Sbjct: 1301 AFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFA 1360

Query: 167  SKKLNNAQRKY 199
            SK L+ A+ +Y
Sbjct: 1361 SKALSPAETRY 1371


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 8    AFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFF 166
            AF++ K  +    +LA P+  A L       I TDAS   IGAVL Q+   G   P+ F 
Sbjct: 1204 AFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFA 1263

Query: 167  SKKLNNAQRKY 199
            SK L+ A+ +Y
Sbjct: 1264 SKALSPAETRY 1274


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
 Frame = +2

Query: 8    AFEDSKSGLANATLLAHPNPRAHLA------IMTDASDSAIGAVLQQKSDSGWV-PLGFF 166
            AF++ K  +    +LA P+  A L       I TDAS   IGAVL Q+   G   P+ F 
Sbjct: 1215 AFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFA 1274

Query: 167  SKKLNNAQRKY 199
            SK L+ A+ +Y
Sbjct: 1275 SKALSPAETRY 1285


>Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical
           protein F15G9.3 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 101 DSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYSP 205
           DS+I   L   + S W+   FF   L NA +KY+P
Sbjct: 120 DSSIKDKLTPYAMSLWLNNSFFPSYLQNAGKKYAP 154


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +2

Query: 5   EAFEDSKSGLANATLLAHPNPRAHLAIMTDASDSAIGAVLQQKSDS 142
           +A + ++SG A       P P   L+ +T  S SA G+ +   S S
Sbjct: 178 QAQQSNRSGAAGVNSALQPKPLPPLSSITSISSSAAGSSISAPSTS 223


>U28928-11|AAA68342.3|  824|Caenorhabditis elegans Hypothetical
           protein C44B7.11 protein.
          Length = 824

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 59  PNPRAHLAIMTDASDSAIGAVLQQKSDSGWVPLGFFS 169
           P P+      T  S+     VLQ+ SD GW P G ++
Sbjct: 65  PEPKDPNQEETQFSEKRAVKVLQELSDYGWKPAGSYN 101


>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 61  KSTSTSSHHDRCLRQCYRRSVA 126
           KST+ S H   CLR CY  S A
Sbjct: 426 KSTTKSRHGWLCLRMCYMYSCA 447


>AC006791-3|ABM01864.1|  906|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform c protein.
          Length = 906

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  FACTPKSTSTSSHHDRCLRQC 108
           +AC P  TSTS H++    +C
Sbjct: 566 WACIPCDTSTSIHNETSCEEC 586


>AC006791-2|AAM97973.1| 1042|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform a protein.
          Length = 1042

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  FACTPKSTSTSSHHDRCLRQC 108
           +AC P  TSTS H++    +C
Sbjct: 566 WACIPCDTSTSIHNETSCEEC 586


>AC006791-1|ABM01865.2| 1044|Caenorhabditis elegans Metabotropic
           glutamate receptorfamily protein 3, isoform d protein.
          Length = 1044

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 46  FACTPKSTSTSSHHDRCLRQC 108
           +AC P  TSTS H++    +C
Sbjct: 566 WACIPCDTSTSIHNETSCEEC 586


>U00031-11|AAK18868.1|  194|Caenorhabditis elegans Hypothetical
           protein B0361.9 protein.
          Length = 194

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 55  TPKSTSTSSHHDRCLRQCYRRSVAAKIRF 141
           T  +T T   HD+CL++C  +     + F
Sbjct: 66  TMLATMTVDEHDQCLQKCAEKPRCKAVNF 94


>AC024857-3|AAK31568.6|  611|Caenorhabditis elegans Hypothetical
           protein Y71G12A.2 protein.
          Length = 611

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = +2

Query: 74  HLAIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRKYS 202
           HL ++ +  D ++    ++K    W P  +FS     A+  +S
Sbjct: 185 HLTLVMEIWDKSLKNQYERKKQHTWEPFAYFSSMTEYARLYWS 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,341,403
Number of Sequences: 27780
Number of extensions: 64685
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)