Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E18
         (208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   1.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   1.5  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   4.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   4.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    19   8.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    19   8.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    19   8.2  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 1.2
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 82  HHDRCLRQCYRRSV--AAKIRFRLGSSRIFL 168
           +H RC R  +R S    ++I  R+  +R+ L
Sbjct: 17  YHQRCSRDWFRISAGCVSRISNRISRNRVLL 47


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 80  AIMTDASDSAIGAVLQQKSDSGWVPLGFFSKKLNNAQRK 196
           A+M       +  V +Q  D+   P G    KL NA+ +
Sbjct: 249 AVMNMTGAGYVWIVTEQALDASNAPEGLLGLKLINAENE 287


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 55  TPKSTSTSSHHDRCLRQCYRRSVAAKI 135
           +P + ++ SH D  LRQ   +S+ A +
Sbjct: 364 SPVTGASKSHGDLELRQRSSKSLLANV 390


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 91  RCLRQCYRRSVAAKI 135
           R LR  Y+R + AK+
Sbjct: 516 RALRYYYQRGILAKV 530


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 206 KGYIYVERCSVSSRKIL 156
           +GY++ E   V SRK +
Sbjct: 242 EGYVHGETKQVQSRKTI 258


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 159 PRGTQPESDFCCNTAPIAL 103
           PR   P S  C   A IAL
Sbjct: 619 PRYISPASQVCIAAALIAL 637


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -2

Query: 159 PRGTQPESDFCCNTAPIAL 103
           PR   P S  C   A IAL
Sbjct: 709 PRYISPASQVCIAAALIAL 727


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,972
Number of Sequences: 438
Number of extensions: 666
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)