Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E17
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 2.8
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 25 4.9
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 24 6.5
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 24 6.5
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 24 6.5
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 24 8.6
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 24 8.6
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 24 8.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 8.6
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 24 8.6
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 2.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 266 SFQIVYYNCLDQFAPNSPDGKFVTSL 189
S + V Y CLD P+S G F SL
Sbjct: 100 SIENVSYKCLDHSPPDSVPGDFSISL 125
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 317 CNISVSNTSVTDITVSVSFQIVYYNCLDQFAPNS 216
C V ++DI + + NCLD +AP+S
Sbjct: 145 CYTHVLPAGLSDIVGKMPVMLFCPNCLDLYAPSS 178
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 6.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 165 EKYAVPLMKRSDKFTVRGVGRELIKAVVINDLKGDGNS 278
EK+ L++ + GR L+ AVVI++ K +G +
Sbjct: 337 EKFRTALIECKSPIVQKVRGRGLLNAVVIDESKTNGRT 374
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 6.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -2
Query: 257 IVYYNCLDQFAPNSPDGKFVTSLHK 183
+ + NCL+ NSP + +HK
Sbjct: 99 VTFRNCLEATVANSPQARVFCLIHK 123
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 288 DGGIGHRNVTIDLQSKRGEGYKFLIDV 368
D G+ H N+T+D K E + LID+
Sbjct: 78 DLGLLHENITLDRIPKVPENHVSLIDI 104
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.8 bits (49), Expect = 8.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 129 IIGGHLIYHEIHEKYAVPLMKRSDK 203
+IG L+Y ++ +K +V KRS K
Sbjct: 78 VIGNFLVYRQLCKKNSVSDRKRSSK 102
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 23.8 bits (49), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -2
Query: 362 YEEFVTFTSFTLQVDC-NISVSNTSVTDITV---SVSFQ 258
++E TS TLQ+DC SV +D+ V S+SF+
Sbjct: 597 FQEVANMTSATLQMDCFEASVIECQKSDLGVFLESLSFK 635
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 262 KETETVISVTEVLDTEMLQSTCKVKEVKVTNSS 360
K+ E SVTEV+DT ++ S+ + SS
Sbjct: 137 KKLEQNYSVTEVIDTNIITSSSVTLPISEDGSS 169
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 23.8 bits (49), Expect = 8.6
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 6 RIIFKSNTYIFTMSSKILLYCLLFISLATL-TVARGNLVIGNIIGGHLIYHEI 161
R++ +T +F++ ++C+ +ISL L +V+GN LI+ +
Sbjct: 669 RVLLFISTALFSIIMIYFVFCVFYISLIPLHNSDNSEIVLGNNYFTTLIFSSL 721
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 126 CLLRDSRALPSAL 88
CL+RDSR PSA+
Sbjct: 490 CLMRDSRKRPSAI 502
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,455,839
Number of Sequences: 5004
Number of extensions: 27156
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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