Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E17
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350...    31   0.21 
01_01_0198 + 1718374-1718875,1719591-1719604                           28   2.0  
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213...    28   2.6  
05_07_0056 + 27382708-27383871,27384450-27384818                       27   4.6  
07_01_0023 - 154119-154541,154697-154741,154875-154922,156104-15...    26   8.1  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    26   8.1  
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    26   8.1  

>07_01_0464 -
           3504264-3504475,3504842-3505031,3505310-3505408,
           3505561-3505653,3505926-3506891,3507267-3507485,
           3508038-3508247,3508371-3508630,3508956-3510737,
           3510796-3511009
          Length = 1414

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = +3

Query: 102 ARGNLVIGNIIGGHLIYHEIHEKY----AVPLMKRSDKFTVRGVGRELIKAV--VINDLK 263
           +R  +V+GN   G     E++++Y    A+P +    K  V+GVG     ++  VI  L+
Sbjct: 294 SRTKVVVGNTSSGVYRDAELYDRYIDLRAIPELNSVSK-DVKGVGIGAAMSISQVIEILR 352

Query: 264 GDGNSY 281
           G+GNSY
Sbjct: 353 GEGNSY 358


>01_01_0198 + 1718374-1718875,1719591-1719604
          Length = 171

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 86  GNADGSARESRNRQHHW-RPSYLPRNTREIRRTP 184
           G ADG   + R R+  W RP++  R  R  RR P
Sbjct: 78  GTADGGRPDWRERRTRWRRPAWRERRGRRWRRRP 111


>03_06_0559 +
           34719296-34719410,34719519-34719577,34719664-34721322,
           34722421-34722562,34722645-34723330
          Length = 886

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +3

Query: 114 LVIGNIIGGHLIYHEIHEKYAVPLMKRSDKFTVRGVGRELIKAVVINDLKGDGNSYISDG 293
           LV  N     ++ H+++ K   P  +RS+  ++ G  R++  A   ++    GN  +   
Sbjct: 351 LVQNNRKQNAMVKHKVNSKPPTPNRQRSNTHSINGTMRKVGTAGTPSENNTQGNRNVELR 410

Query: 294 GIGHRN 311
             GH N
Sbjct: 411 STGHAN 416


>05_07_0056 + 27382708-27383871,27384450-27384818
          Length = 510

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 266 SFQIVYYNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYY 117
           SF +   N LD   P   D    T LH+ YG F+V+    + A +++ Y+
Sbjct: 209 SFIVKLLNLLDSEDPRERDC-LKTILHRIYGKFMVHRPFIRKAVSNIFYH 257


>07_01_0023 -
           154119-154541,154697-154741,154875-154922,156104-156185,
           156365-156444,156606-156677,156827-156921,157479-157515
          Length = 293

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +2

Query: 44  VIENSAILPVIY*SGNADGSARESRNRQHHWRPSYLPRNTREIRRTPYE 190
           ++ N     V Y S      A E  N + +WR    P++   ++RT ++
Sbjct: 118 LVSNKMHALVEYESSQQAEKAVEKLNDERNWRKGLRPKSVMRLKRTEFD 166


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 240 AVVINDLKGDGNSYISDGGIGHRNVTIDLQS 332
           A +I  L  D ++YI D  IGH N   D QS
Sbjct: 265 AFLIQGLTVDQDNYIEDYMIGHNNDEFDDQS 295


>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 241 ALINSRPTPLTVNLSLLFIRGTAYFSCISW*IRWPPMMLPITRFP 107
           AL+   P P  + LS LFI G ++ + + + +    +   + RFP
Sbjct: 152 ALLWHNPNPSMIVLSKLFIAGLSFSAALGFLLYGGRLFFMLKRFP 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,075
Number of Sequences: 37544
Number of extensions: 173975
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)