Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E17
         (369 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein.     31   1.2  
BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein.        31   1.2  
AF237652-1|AAK15041.1|  766|Homo sapiens a disintegrin-like and ...    30   2.7  
U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.               29   6.2  
BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein pr...    29   6.2  
BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.             29   6.2  
BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.             29   6.2  
AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.             29   6.2  
AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.              29   6.2  

>BC128390-1|AAI28391.1| 1682|Homo sapiens ADAMTSL3 protein protein.
          Length = 1682

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 174 AVPLMKRSDKFTVRGVGRELIKAVVINDLKGDGNSYISDGGIGHRNVTIDLQ 329
           AVPL  RS + TV+G     I++  +   KG+ +S+ S G     N T++ Q
Sbjct: 249 AVPLGSRSVRITVKGPAHLFIESKTLQGSKGE-HSFNSPGVFVVENTTVEFQ 299


>BC128389-1|AAI28390.1| 1691|Homo sapiens ADAMTS-like 3 protein.
          Length = 1691

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 174 AVPLMKRSDKFTVRGVGRELIKAVVINDLKGDGNSYISDGGIGHRNVTIDLQ 329
           AVPL  RS + TV+G     I++  +   KG+ +S+ S G     N T++ Q
Sbjct: 249 AVPLGSRSVRITVKGPAHLFIESKTLQGSKGE-HSFNSPGVFVVENTTVEFQ 299


>AF237652-1|AAK15041.1|  766|Homo sapiens a disintegrin-like and
           metalloprotease domain with thrombospondin type I motifs
           protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +3

Query: 174 AVPLMKRSDKFTVRGVGRELIKAVVINDLKGDGNSYISDGGIGHRNVTIDLQ 329
           AVPL  RS + TV+G     I++  +   KG+ +S+ S G     N T++ Q
Sbjct: 249 AVPLGSRSVRITVKGPVHLFIESKTLQGSKGE-HSFNSPGVFVVENTTVEFQ 299


>U58087-1|AAC50544.1|  752|Homo sapiens Hs-CUL-1 protein.
          Length = 752

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 353 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 401


>BX537409-1|CAD97651.1|  776|Homo sapiens hypothetical protein
           protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 377 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 425


>BC125120-1|AAI25121.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 377 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 425


>BC125119-1|AAI25120.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 377 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 425


>AF062536-1|AAC36681.1|  776|Homo sapiens cullin 1 protein.
          Length = 776

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 377 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 425


>AC006323-3|AAS02034.1|  513|Homo sapiens unknown protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -2

Query: 248 YNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEIPARY 99
           YN L   A N+ D  FV +L K  G F+    V KMA +     E+ ARY
Sbjct: 114 YNALVMSAFNN-DAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARY 162


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,549,147
Number of Sequences: 237096
Number of extensions: 966981
Number of successful extensions: 5540
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5540
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2363825726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)