Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E17
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92972-7|CAB07486.1| 402|Caenorhabditis elegans Hypothetical pr... 28 1.8
AL023816-3|CAA19432.1| 296|Caenorhabditis elegans Hypothetical ... 28 1.8
Z81536-7|CAB04367.1| 338|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z47812-2|CAA87789.2| 396|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical pr... 26 7.3
U64847-6|AAB04875.1| 380|Caenorhabditis elegans Hypothetical pr... 26 7.3
U40707-1|AAB39924.1| 278|Caenorhabditis elegans apurinic/apyrim... 26 7.3
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr... 26 9.7
U29487-1|AAA68768.1| 253|Caenorhabditis elegans 2 (zwei) ig-dom... 26 9.7
AF456251-1|AAL59609.1| 253|Caenorhabditis elegans secreted 2-im... 26 9.7
>Z92972-7|CAB07486.1| 402|Caenorhabditis elegans Hypothetical
protein T19C9.8 protein.
Length = 402
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 230 FAPNSPDGKFVTSLHKGYGVFLVY-FVVDKMAANDVAYY 117
+AP S D K+V S +G G VY V+ K AN VA Y
Sbjct: 190 YAPGSFDTKYVLSSFEGDGKLDVYNGVITKNQANRVASY 228
>AL023816-3|CAA19432.1| 296|Caenorhabditis elegans Hypothetical
protein T05G11.4 protein.
Length = 296
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = -2
Query: 290 VTDITVSVSFQIVYYNCLDQFAPNSPDGKFVTSLHKGYGVFLVYFVVDKMAANDVAYYEI 111
VT +T+S + + F P + + ++ +G+ LV+ A+ YY +
Sbjct: 201 VTFMTISFLISTTPHGLMYVFGPFLVEIPVILMIYSRFGLILVFLTTVNGVAHFSVYYFM 260
Query: 110 PARYRQ 93
+RYR+
Sbjct: 261 SSRYRK 266
>Z81536-7|CAB04367.1| 338|Caenorhabditis elegans Hypothetical
protein F40D4.9a protein.
Length = 338
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 9 IIFKSNTYIFTMSSKILLYCLLFISLATLTVARGNLVIGNII 134
IIF + + M +++ + + +L+TL V GNL GNI+
Sbjct: 79 IIFPITNHFYKMVMISVIFLIFYTALSTL-VEHGNLKEGNIL 119
>Z47812-2|CAA87789.2| 396|Caenorhabditis elegans Hypothetical
protein T05H10.2 protein.
Length = 396
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 219 VGRELIKAVVINDLKGDGNS------YISDGGIGHRNVTIDLQSKRGEGYKFLID 365
VG +KA+ IND KGD S +I G IG + + R +G +++
Sbjct: 323 VGWNYLKAIHINDSKGDVGSKLDRHEHIGQGKIGKAAFELLMNDNRLDGIPMILE 377
>Z46996-3|CAA87100.2| 331|Caenorhabditis elegans Hypothetical
protein C34C12.3 protein.
Length = 331
Score = 26.2 bits (55), Expect = 7.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 36 FTMSSKILLYCLLFISLATLTVARGNLVIGNIIGGHLIYHEIHEKY 173
+++ + LL+CLL +T+ RGN I + Y E KY
Sbjct: 114 YSLETVTLLFCLLLKYPNQITLLRGNHESRRISNVYGFYDECQNKY 159
>U64847-6|AAB04875.1| 380|Caenorhabditis elegans Hypothetical
protein F08F3.8 protein.
Length = 380
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 114 LVIGNIIGGHLIYHEIHEKYAVPLMKRSDK 203
+++G +IG +L H +H K P+ K DK
Sbjct: 272 IILGIVIGIYLYLHHVH-KLEQPVSKEDDK 300
>U40707-1|AAB39924.1| 278|Caenorhabditis elegans
apurinic/apyrimidinic endonuclease protein.
Length = 278
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Frame = +3
Query: 219 VGRELIKAVVINDLKGDGNS------YISDGGIGHRNVTIDLQSKRGEGYKFLID 365
VG +KA+ IND KGD S +I G IG + + R +G +++
Sbjct: 205 VGWNYLKAIHINDSKGDVGSKLDRHEHIGQGKIGKAAFELLMNDNRLDGIPMILE 259
>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
protein F54D1.6 protein.
Length = 1423
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 143 SYLPRNTREIRRTPYEEK*QIYRQGSW 223
+Y RNT E R P EE+ +Y+ W
Sbjct: 538 TYSNRNTYEYRWKPQEERINLYQVEQW 564
>U29487-1|AAA68768.1| 253|Caenorhabditis elegans 2 (zwei) ig-domain
protein protein4 protein.
Length = 253
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 183 LMKRSDKFTVRGVGRELIKAVVINDL 260
L+K +DKFTV G +IK +V +D+
Sbjct: 199 LVKNNDKFTVLSNGDLVIKNIVWDDM 224
>AF456251-1|AAL59609.1| 253|Caenorhabditis elegans secreted
2-immunoglobulin-domainprotein ZIG-4 protein.
Length = 253
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 183 LMKRSDKFTVRGVGRELIKAVVINDL 260
L+K +DKFTV G +IK +V +D+
Sbjct: 199 LVKNNDKFTVLSNGDLVIKNIVWDDM 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,040,344
Number of Sequences: 27780
Number of extensions: 153650
Number of successful extensions: 459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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