Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E16
(243 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar... 62 1e-11
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 25 1.9
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 25 1.9
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 24 3.2
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 23 4.3
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 23 5.6
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 23 5.6
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 23 7.5
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 22 9.9
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 22 9.9
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 22 9.9
>SPAC15E1.03 |rpl36a||60S ribosomal protein
L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 61.7 bits (143), Expect = 1e-11
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Frame = +1
Query: 25 MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQE 198
MVN+PK R+TY +QYKK + AQG+RRYDRKQ G+GGQ+KP +
Sbjct: 1 MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60
Query: 199 EGKNYKE 219
+ K K+
Sbjct: 61 KAKVTKK 67
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 24.6 bits (51), Expect = 1.9
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +2
Query: 32 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAE 139
T H +N + KFT+ L GTP + E
Sbjct: 195 TMLEETRHGLENGDFVKFTEVKGMPGLNDGTPRKVE 230
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 1.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 165 LWWSIQTASSRRRQKLQRKLYFVW 236
LWW+I+ SR + L + F W
Sbjct: 228 LWWAIRCICSRTKLHLVQVCLFCW 251
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.8 bits (49), Expect = 3.2
Identities = 7/22 (31%), Positives = 16/22 (72%)
Frame = +3
Query: 159 TGLWWSIQTASSRRRQKLQRKL 224
+GL+WS+++A R +++ R +
Sbjct: 756 SGLYWSVKSAGVRASRRVSRNI 777
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 136 RRRYDRKQQGYGGQSKPHLQEEGKNY 213
R +DR Q GY G + P+ + Y
Sbjct: 329 RDSHDRHQHGYHGNANPYYAQNMNMY 354
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 23.0 bits (47), Expect = 5.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 106 FCTETLCELCDICIFCSMFCAV 41
F +ETLC C IC+ F A+
Sbjct: 49 FISETLCIGCGICVKKCPFGAI 70
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 23.0 bits (47), Expect = 5.6
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 94 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTS-SGMC 243
+Q K ++ + A + +Y R ++ EEGK C+S G+C
Sbjct: 58 AQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEGKTLMVACSSDKGLC 108
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 22.6 bits (46), Expect = 7.5
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = -3
Query: 193 EDAVWIDHHNPVVYGRNVFC 134
++ ++ +H P+VYGR+ C
Sbjct: 175 DEVLYAVYHLPLVYGRSESC 194
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 22.2 bits (45), Expect = 9.9
Identities = 5/19 (26%), Positives = 10/19 (52%)
Frame = -3
Query: 103 CTETLCELCDICIFCSMFC 47
C C +C + + C ++C
Sbjct: 30 CYPLYCVVCFVSVLCRLYC 48
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 22.2 bits (45), Expect = 9.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 62 KNANVTKFTKCLSTKSLR 115
KN+ V+K KCL +++R
Sbjct: 291 KNSEVSKTCKCLQKETIR 308
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 174 SIQTASSRRRQKLQRKLY 227
SIQ A RR+++L+ LY
Sbjct: 554 SIQLAELRRKERLESHLY 571
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,599
Number of Sequences: 5004
Number of extensions: 12576
Number of successful extensions: 42
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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