Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E16
(243 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 66 4e-12
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 66 4e-12
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 66 4e-12
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 64 2e-11
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 64 2e-11
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 64 2e-11
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 64 2e-11
01_05_0283 - 20354065-20354154,20354579-20354890,20355566-203557... 27 1.6
11_01_0266 - 2010572-2011879 27 2.8
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 26 4.9
09_06_0012 - 20221635-20221954,20221988-20222064,20222580-202226... 26 4.9
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 26 4.9
03_01_0218 - 1717246-1717892,1717995-1718163,1718262-1720022,172... 26 4.9
01_07_0017 + 40486413-40486532,40487643-40487879 26 4.9
01_06_0455 - 29515136-29515372,29516081-29516218 26 4.9
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 25 6.4
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174... 25 6.4
02_02_0338 + 9105725-9106581,9106950-9107091 25 6.4
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 25 8.5
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 25 8.5
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 66.1 bits (154), Expect = 4e-12
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 25 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQE 198
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP +
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 199 EGKNYKE 219
+ K K+
Sbjct: 61 KAKTTKK 67
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 66.1 bits (154), Expect = 4e-12
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 25 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQE 198
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP +
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 199 EGKNYKE 219
+ K K+
Sbjct: 61 KAKTTKK 67
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 66.1 bits (154), Expect = 4e-12
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Frame = +1
Query: 25 MVNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQE 198
MVNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP +
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 199 EGKNYKE 219
+ K K+
Sbjct: 61 KAKTTKK 67
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 28 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP ++
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 202 GKNYKE 219
K K+
Sbjct: 90 AKTTKK 95
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 28 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP ++
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 202 GKNYKE 219
K K+
Sbjct: 90 AKTTKK 95
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 28 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP ++
Sbjct: 29 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 88
Query: 202 GKNYKE 219
K K+
Sbjct: 89 AKTTKK 94
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 64.1 bits (149), Expect = 2e-11
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 28 VNVPKQRRTYXXXXX--XXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
VNVPK ++TY +QYKK K+ +AQG+RRYDRKQ GYGGQ+KP ++
Sbjct: 30 VNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKK 89
Query: 202 GKNYKE 219
K K+
Sbjct: 90 AKTTKK 95
>01_05_0283 -
20354065-20354154,20354579-20354890,20355566-20355763,
20356371-20356754,20357445-20357858,20359771-20360022
Length = 549
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 109 SKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKEN 222
+K RH +RR + K+ G +S+PH+ + ++N
Sbjct: 480 AKARHHIHLKRRLNVKKAGQQARSRPHILGQSSQQQQN 517
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 94 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQE 198
S+ +K+++RH A+G+ YD+ + + P L+E
Sbjct: 3 SEKRKTRDRHGARGKASYDKPKPSI---TDPELEE 34
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +1
Query: 37 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSK 183
P + R Y + K RH+A+ + RY R+ Q Y + K
Sbjct: 250 PHREREYSRMIGDAWNRLAADDKMVYYRHSAEDKERYKREMQEYNERLK 298
>09_06_0012 -
20221635-20221954,20221988-20222064,20222580-20222698,
20223244-20223558
Length = 276
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -3
Query: 211 SFCLLLEDAVWIDHH--NPVVYGRNVFCPERRAFP*TFCTETLCELC 77
S C L + VWI+HH + VV N + A CT T LC
Sbjct: 209 SKCYLTDPGVWINHHVGDFVVKSSNELVKIQFAMVQIDCTHTKGGLC 255
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 147 RP*TTGLWWSIQTASSRRRQKLQRKLYFVWNV 242
+P TGL WS + SS + ++ F+W V
Sbjct: 539 QPAMTGLEWSYELKSSSKSTSVEALTMFLWMV 570
>03_01_0218 -
1717246-1717892,1717995-1718163,1718262-1720022,
1720531-1720610,1720854-1720981,1721004-1721012,
1723701-1723742,1725891-1726002,1726358-1726514,
1726678-1726762,1727628-1727713,1727998-1728042
Length = 1106
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 142 RYDRKQQGYGGQ-SKPHLQEEGKNYKENCTSSG 237
R RKQ+GYG + P +EE K K+ G
Sbjct: 751 RLQRKQEGYGSRPPPPSSEEERKGRKDTFNIKG 783
>01_07_0017 + 40486413-40486532,40487643-40487879
Length = 118
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 97 ETLCELCDICIFCSMFCAVWVRSPFLRLFSLV 2
E L L I + F +W+ +PFLR ++V
Sbjct: 63 ELLVPLSIIVVMQPFFILMWIAAPFLRTVAIV 94
>01_06_0455 - 29515136-29515372,29516081-29516218
Length = 124
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 97 ETLCELCDICIFCSMFCAVWVRSPFLRLFSLV 2
E L L I + F +W+ +PFLR ++V
Sbjct: 69 EMLVALSIIVVMQPFFILMWIAAPFLRTVAIV 100
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 115 ERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
+RH + RRR + GG+S+ H ++E
Sbjct: 132 DRHRRRHRRRSPSSESSDGGRSRRHRRDE 160
>11_06_0766 -
27115441-27115760,27115878-27116025,27116213-27117417,
27117510-27117753,27120181-27120357
Length = 697
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 109 SKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENC 225
S+ERH A Y R+ S HL+ G ++ NC
Sbjct: 352 SEERHLASEGVEYARRAIKLSESSDVHLKSVGLHFLGNC 390
>02_02_0338 + 9105725-9106581,9106950-9107091
Length = 332
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 97 QYKKSKERHAAQGRRRYDRKQQGYGGQS 180
QY++ +++ A +R+Y R + G GG S
Sbjct: 57 QYRQQQQQQPANRKRQYGRHRGGGGGCS 84
>12_01_0672 +
5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 109 TFCTETLCELCDICIFCS 56
TF T C+ CD+C CS
Sbjct: 146 TFDTSIACDSCDLCGDCS 163
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1
Query: 136 RRRYDRKQQGYGGQSKPHLQEEGKNYKENCTS 231
+RR RK + HL EE NY E C S
Sbjct: 351 KRRPRRKSSVERLKVSKHLAEEAMNYFEECVS 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,459,178
Number of Sequences: 37544
Number of extensions: 83963
Number of successful extensions: 266
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 59
effective length of database: 12,578,252
effective search space used: 264143292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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