Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E16
(243 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 69 6e-13
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 69 6e-13
Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical pr... 27 1.8
U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical p... 26 3.1
L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z81086-4|CAB03117.1| 342|Caenorhabditis elegans Hypothetical pr... 26 4.1
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 26 4.1
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 26 4.1
AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical ... 26 4.1
AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered cu... 26 4.1
Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical pr... 25 5.4
U28941-7|AAC71104.1| 330|Caenorhabditis elegans Hypothetical pr... 25 5.4
AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical ... 25 5.4
AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine re... 25 5.4
Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr... 25 7.1
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 25 7.1
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ... 25 7.1
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ... 25 7.1
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer... 25 7.1
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ... 25 7.1
U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate fi... 25 9.4
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 25 9.4
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 25 9.4
L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical pr... 25 9.4
L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical pr... 25 9.4
L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical pr... 25 9.4
L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF036703-2|AAB88557.3| 535|Caenorhabditis elegans Hypothetical ... 25 9.4
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 68.5 bits (160), Expect = 6e-13
Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 25 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KP +++
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 202 GKNYKE 219
K K+
Sbjct: 61 AKTTKK 66
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 68.5 bits (160), Expect = 6e-13
Identities = 34/66 (51%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +1
Query: 25 MVNVPKQRRTYXXXX-XXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEE 201
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KP +++
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 202 GKNYKE 219
K K+
Sbjct: 61 AKTTKK 66
>Z11126-4|CAA77472.2| 180|Caenorhabditis elegans Hypothetical
protein ZK643.6 protein.
Length = 180
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 103 CTETLCELCDICIFCSMFCAVWVRSPFLRLF 11
C +T C C+IC + C +WV F F
Sbjct: 134 CPKT-CNACNICEDANKMCPIWVPRGFCSKF 163
>U29244-15|AAC71096.2| 471|Caenorhabditis elegans Hypothetical
protein ZK1248.15 protein.
Length = 471
Score = 26.2 bits (55), Expect = 3.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 32 TYPNSAEHTAKNANVTKFTKCLSTKSLRKGTPLRAED 142
TYP+S +++N NV K TK S R PL D
Sbjct: 426 TYPSSTYQSSQNGNVVKTTK---PNSNRPKIPLSLSD 459
>L11247-1|AAA28010.2| 484|Caenorhabditis elegans Hypothetical
protein F09G8.5 protein.
Length = 484
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 196 LEDAVWIDHHNPVVYGRNVFCPERRA 119
+ + + I+ P VYGR+V P RRA
Sbjct: 407 MHEGMVIEMKRPPVYGRSVSMPRRRA 432
>Z93377-3|CAB07580.1| 358|Caenorhabditis elegans Hypothetical
protein F13A7.7 protein.
Length = 358
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 112 KERHAAQGRRRYDRKQQGYGGQSKPHLQEEGK 207
K++ GRRR + ++ G Q K L+EE K
Sbjct: 17 KDKEKDDGRRRTESERSNAGEQPKKDLEEEIK 48
>Z81086-4|CAB03117.1| 342|Caenorhabditis elegans Hypothetical
protein F53B6.4 protein.
Length = 342
Score = 25.8 bits (54), Expect = 4.1
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = +1
Query: 22 KMVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQ-- 195
K+ +PK ++T + K SKE + A + +Y Q GG ++ L+
Sbjct: 205 KVALIPKTQQTTGSQVGHSLAEEVNSIKHSKEMNVAPAKLQY----QTLGGVNQIELKNT 260
Query: 196 -EEGKNYKENCTSSGM 240
E K YK C+ + +
Sbjct: 261 SNERKAYKIKCSDNSL 276
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 175 QSKPHLQEEGKNYKENCTSSGMC 243
Q K L +G+NY ENC C
Sbjct: 106 QDKFFLSIDGRNYHENCLQCSTC 128
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 175 QSKPHLQEEGKNYKENCTSSGMC 243
Q K L +G+NY ENC C
Sbjct: 106 QDKFFLSIDGRNYHENCLQCSTC 128
>AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical
protein T22H9.3 protein.
Length = 990
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Frame = +1
Query: 103 KKSKERHAAQGRRRYDRKQQGYGGQSKPHLQ-----EEGKNYKEN 222
K+ R+ +GR Y+RK+ G G P Q E Y+EN
Sbjct: 305 KRGSSRNDYRGRGDYNRKKTGGGSTDAPDHQDVAEVERSLEYREN 349
>AF003386-13|AAB54250.1| 311|Caenorhabditis elegans Blistered
cuticle protein 2 protein.
Length = 311
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 97 QYKKSKERHAAQGRRRYDRKQQGYG-GQSKPHLQEEGKNYKENCTSSGMC 243
QY++ + +GRR +KQ GY +S + + + K + G C
Sbjct: 66 QYERMQSASGIKGRRIIVKKQAGYDFAESNTNAESGFSSSKSSLAPGGQC 115
>Z71181-7|CAA94900.2| 485|Caenorhabditis elegans Hypothetical
protein K07C5.7 protein.
Length = 485
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 166 NPVVYGRNVFCPERRAFP*TFCTETLCELCDICIFCSM 53
NP+V R++ P + FC E CE CD C +
Sbjct: 393 NPLVNSRDINLPLK------FCVENKCESCDEAPECQL 424
>Z68752-3|CAE54905.1| 888|Caenorhabditis elegans Hypothetical
protein T12G3.2c protein.
Length = 888
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 229 KYNFLCSFCLLLEDAVWIDHHNPVVYGRNVFCPERR 122
KY C C +D ++ +V +NV CP R
Sbjct: 536 KYKLQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLR 571
>Z68752-2|CAE54904.1| 912|Caenorhabditis elegans Hypothetical
protein T12G3.2b protein.
Length = 912
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 229 KYNFLCSFCLLLEDAVWIDHHNPVVYGRNVFCPERR 122
KY C C +D ++ +V +NV CP R
Sbjct: 536 KYKLQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLR 571
>Z68752-1|CAA92981.1| 928|Caenorhabditis elegans Hypothetical
protein T12G3.2a protein.
Length = 928
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 229 KYNFLCSFCLLLEDAVWIDHHNPVVYGRNVFCPERR 122
KY C C +D ++ +V +NV CP R
Sbjct: 536 KYKLQCPDCCSGQDGARVNGVQQIVTFKNVLCPHLR 571
>U28941-7|AAC71104.1| 330|Caenorhabditis elegans Hypothetical
protein F31D5.6 protein.
Length = 330
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 241 TFQTK-YNFLCSFCLLLEDAVWIDHHNPVV 155
TF+T+ Y L SF L+D V ++H N VV
Sbjct: 260 TFKTEGYETLDSFVAELQDFVIVEHTNTVV 289
>AF098501-7|AAC67402.1| 199|Caenorhabditis elegans Hypothetical
protein H28G03.3 protein.
Length = 199
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 94 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTSSGMC 243
++Y + + + +R DR+ + +++ L+EEG+N +E S+ C
Sbjct: 108 NEYLQREHAEMQKSIKRKDREIERLRSKNR-RLEEEGRNIREQMPSTRTC 156
>AC006680-5|AAK72301.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein60 protein.
Length = 300
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 106 FCTETLCELCDICIFCSMFCAVWVRSPFLRLFS 8
FC E L L I + FCAVWV + + FS
Sbjct: 85 FCYE-LSVLTHFLISINRFCAVWVPLKYEKWFS 116
>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical
protein F14F4.3b protein.
Length = 1427
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 65 FLQYVLRCLGTFTIFTSVQP 6
FLQ ++ CLG + TSV P
Sbjct: 916 FLQNMITCLGFLVVITSVFP 935
>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical
protein F14F4.3a protein.
Length = 1400
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 65 FLQYVLRCLGTFTIFTSVQP 6
FLQ ++ CLG + TSV P
Sbjct: 889 FLQNMITCLGFLVVITSVFP 908
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +1
Query: 94 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTSSG 237
S KK E A + + RY+++ + Y P + + K + SSG
Sbjct: 597 SDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTSKKSSG 644
>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
protein F14F4.3b protein.
Length = 1427
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 65 FLQYVLRCLGTFTIFTSVQP 6
FLQ ++ CLG + TSV P
Sbjct: 916 FLQNMITCLGFLVVITSVFP 935
>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
protein F14F4.3a protein.
Length = 1400
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 65 FLQYVLRCLGTFTIFTSVQP 6
FLQ ++ CLG + TSV P
Sbjct: 889 FLQNMITCLGFLVVITSVFP 908
>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform b protein.
Length = 1051
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 82 LCDICIFCSMFCAVW 38
L +C+ C++ CAVW
Sbjct: 29 LIAMCLICTILCAVW 43
>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 2, isoform a protein.
Length = 1222
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 82 LCDICIFCSMFCAVW 38
L +C+ C++ CAVW
Sbjct: 200 LIAMCLICTILCAVW 214
>U56860-5|AAP40524.1| 685|Caenorhabditis elegans Intermediate
filament, c protein2, isoform c protein.
Length = 685
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 97 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTSS 234
+Y + + + Y ++QQ + K H QE+ +NY + S+
Sbjct: 279 RYDNGSSPNYQRQEQGYQQQQQHRSREYKTHRQEKQENYNQRSYSA 324
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 97 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTSS 234
+Y + + + Y ++QQ + K H QE+ +NY + S+
Sbjct: 279 RYDNGSSPNYQRQEQGYQQQQQHRSREYKTHRQEKQENYNQRSYSA 324
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 97 QYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYKENCTSS 234
+Y + + + Y ++QQ + K H QE+ +NY + S+
Sbjct: 279 RYDNGSSPNYQRQEQGYQQQQQHRSREYKTHRQEKQENYNQRSYSA 324
>L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical
protein F44E2.7b protein.
Length = 379
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%)
Frame = +1
Query: 37 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYK 216
PK+RR +++K E + Y+RK++ + + +++E K
Sbjct: 24 PKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKDEEKRKA 83
Query: 217 EN 222
E+
Sbjct: 84 ED 85
>L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical
protein F44E2.7c protein.
Length = 411
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%)
Frame = +1
Query: 37 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYK 216
PK+RR +++K E + Y+RK++ + + +++E K
Sbjct: 56 PKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKDEEKRKA 115
Query: 217 EN 222
E+
Sbjct: 116 ED 117
>L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical
protein F44E2.7a protein.
Length = 471
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%)
Frame = +1
Query: 37 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYK 216
PK+RR +++K E + Y+RK++ + + +++E K
Sbjct: 116 PKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKDEEKRKA 175
Query: 217 EN 222
E+
Sbjct: 176 ED 177
>L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical
protein F44E2.7d protein.
Length = 469
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/62 (19%), Positives = 26/62 (41%)
Frame = +1
Query: 37 PKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPHLQEEGKNYK 216
PK+RR +++K E + Y+RK++ + + +++E K
Sbjct: 114 PKRRRIDVEQSRRSVAAAAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKDEEKRKA 173
Query: 217 EN 222
E+
Sbjct: 174 ED 175
>AF036703-2|AAB88557.3| 535|Caenorhabditis elegans Hypothetical
protein T11F8.4 protein.
Length = 535
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 103 KKSKER--HAAQGRRRYDRKQQGYGGQS 180
+KSKE H GRR DR+ GG+S
Sbjct: 424 EKSKETKDHRESGRRLTDREANAVGGKS 451
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,810,357
Number of Sequences: 27780
Number of extensions: 77229
Number of successful extensions: 279
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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