Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E16
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   5.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   5.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    19   6.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   6.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    19   6.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    19   8.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          19   8.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   8.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     19   8.8  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  QYKKSKERHAAQGRRRYDRKQ 159
           +Y+K +ER   + R R +R++
Sbjct: 288 EYRKYRERSKERSRDRTERER 308


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 5.0
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = -3

Query: 85  ELCDICIFCSMFCAVWV 35
           E+  + IF  ++C++W+
Sbjct: 126 EVFKVWIFGDLWCSIWL 142


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  QYKKSKERHAAQGRRRYDRKQ 159
           +Y+K +ER   + R R +R++
Sbjct: 55  KYRKYRERSKERSRDRTERER 75


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  QYKKSKERHAAQGRRRYDRKQ 159
           +Y+K +ER   + R R +R++
Sbjct: 55  KYRKYRERSKERSRDRTERER 75


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 68  ANVTKFTKCLSTKSLRKGT 124
           A V  F KC    S+R+GT
Sbjct: 14  AIVFLFDKCSGYPSIRQGT 32


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 171 WSIQTASSRRRQKLQRKL 224
           W +Q    +  +KL+RK+
Sbjct: 43  WLVQQEREQEYEKLKRKM 60


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 169 GGQSKPHLQEEGKNYKENCTS 231
           GG +  H      NY+ N TS
Sbjct: 4   GGMAGQHYCLRWNNYQSNMTS 24


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 174  SIQTASSRRRQKLQRK 221
            S+++ SSRRRQ  QRK
Sbjct: 1760 SMKSVSSRRRQ--QRK 1773


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 174  SIQTASSRRRQKLQRK 221
            S+++ SSRRRQ  QRK
Sbjct: 1756 SMKSVSSRRRQ--QRK 1769


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.0 bits (37), Expect = 8.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 118 RHAAQGRRRYDRKQQGYGGQ 177
           +++ Q  R YDR+ + + G+
Sbjct: 289 KNSGQWLREYDRELEDFDGR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,294
Number of Sequences: 438
Number of extensions: 1129
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)