Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E15
(327 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 0.95
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 1.7
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 1.7
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 2.2
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 25 2.2
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 2.2
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 25 2.2
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 2.9
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 25 2.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 2.9
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 3.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 3.8
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 25 3.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 24 5.1
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 5.1
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 24 5.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 24 6.7
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 23 8.8
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 23 8.8
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 23 8.8
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 0.95
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 181 SLEDQLRRLKEYEAGVYAYKPHIEELE 261
S+ED+ + + YE+ + +PH+ ELE
Sbjct: 731 SVEDKKKEIGHYESLIKEKQPHLSELE 757
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 1.7
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +2
Query: 53 RSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQA-- 226
+S SS+ R S++ PS PG+ P + + A +SAD+ +K A
Sbjct: 503 KSAQSSKHARR---PSKQASAPSSPGTTSAAVPGGKKSAIEAAAPIPTSADTVESKHAAG 559
Query: 227 STRTNHISRNWNASTKPS 280
S I +A+TKP+
Sbjct: 560 SGSATTIPSPGSATTKPT 577
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 1.7
Identities = 24/84 (28%), Positives = 47/84 (55%)
Frame = +2
Query: 32 SATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSK 211
S+T+ P S +RT+ + ++S TPS S +PS S+ + K+SS+ S
Sbjct: 128 SSTSIAP-SMIGTRTSSSYFITSSS-STPSSSSSSSSSSPSSSSS-KSSSSSKSSSSSSS 184
Query: 212 NTKQASTRTNHISRNWNASTKPSK 283
++K +S+ ++ S++ ++S+ SK
Sbjct: 185 SSKSSSSSSSS-SKSSSSSSSSSK 207
Score = 24.2 bits (50), Expect = 5.1
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 56 SCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQAST 232
S +SS+++ + SS+ +PS S +++ S A +S A N K AST
Sbjct: 192 SSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTAST 250
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +2
Query: 119 SDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNWNASTKPSKRA 289
S+ G + + P P CR + A N+K A T+ + + NA K K++
Sbjct: 226 SNTGDKDIFKPRYPQLLSCRFTTLSKLAPINNSKSAPKGTHKPNHSENAELKDIKQS 282
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 216 RSRRLRVQTTYRGTGTHPPSRPRG 287
RSR L ++ T RGT +P P G
Sbjct: 248 RSRWLGIRPTVRGTAMNPCDHPHG 271
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 2.2
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -1
Query: 153 DGVHLPLDPGSD 118
DG+H+ +DPGSD
Sbjct: 21 DGIHIYIDPGSD 32
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.4 bits (53), Expect = 2.2
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = -1
Query: 327 LHRVFRIPILE-DHALLDGLVDAFQFLDMWFVRVD--ACFVFFESAELVFQRALQTHADG 157
L+R+ R P L+ D+A+ ++ +W + +F S +V++ ++QT DG
Sbjct: 324 LYRMLRSPTLDLDYAIFQLEEWRKEWCHLWEQPEPQYSRIAYFYSYNVVYEASIQTATDG 383
Query: 156 CDGVHLP 136
D ++P
Sbjct: 384 NDFANIP 390
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 123 TLDREADGRRHSHRHGSAGLFGRPAPQTQRIRS 221
+L R + SH GLF PAP Q + S
Sbjct: 682 SLSRAPSTSKKSHFEDILGLFASPAPSAQPVDS 714
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 2.9
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +1
Query: 46 LAAELRKQQNNE-----SLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLK 210
L AE +K ++NE S+RR+ EK + W ER+ + A+ M Q E+ L++ +
Sbjct: 155 LQAEGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLM-RQQRREENLKKRR 213
Query: 211 E 213
E
Sbjct: 214 E 214
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.0 bits (52), Expect = 2.9
Identities = 12/53 (22%), Positives = 26/53 (49%)
Frame = +1
Query: 169 GLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQAVQEGMIFENRYAKYTME 327
GL + D +++ E +YA++ ++ + ++ GMI N+ T+E
Sbjct: 273 GLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVGMIHLNKSENRTVE 325
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 99 RGEGKRRRTLDREADGRRHSH 161
R G R R+ADGRR +H
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTH 1563
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 3.8
Identities = 16/68 (23%), Positives = 34/68 (50%)
Frame = +2
Query: 95 SSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNWNASTK 274
SS +PS + +PS S+ + +SS+ S ++ +S+ ++ S + ++S+
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 275 PSKRA*SS 298
S + SS
Sbjct: 197 SSSSSSSS 204
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 24.6 bits (51), Expect = 3.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 170 VCRALWKTSSADSKNTKQASTRTNHISRN 256
+C+ L K DS TKQ ++ I RN
Sbjct: 269 ICQTLRKRLENDSSTTKQRLSKLEEIIRN 297
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.2 bits (50), Expect = 5.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 75 QREPEASVRGEGKRRRTLDREADGRR 152
+ E E + E KRR LD+E + RR
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERR 719
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 24.2 bits (50), Expect = 5.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 149 PSQPSAWVCRALW-KTSSADSKNTKQASTRTNHISRNWNASTKPSK 283
PS+PS + L K S KN AST + +SRN + +P K
Sbjct: 315 PSKPSLLQTQPLKRKNYSPWYKNNFGASTPASRVSRNPYTAAQPRK 360
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 24.2 bits (50), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 202 RLKEYEAGVYAYKPHIEELER 264
R++ YEAGV Y EE +R
Sbjct: 447 RIRSYEAGVLLYPKLFEESQR 467
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 23.8 bits (49), Expect = 6.7
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +3
Query: 111 KRRRTLDREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRVQTTYRGTGTHPP 272
K ++ D A + SAG R A +T I ++L V R PP
Sbjct: 20 KLKKVSDGSASNNPKAFAVASAGRMARQAMRTADISQKKLHVPMVDRTPDEAPP 73
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 8.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 62 ASSRTTRA*GVSSRRRQTPSDPGSRGRWTPS 154
AS+ TT G S + T S PGS TPS
Sbjct: 216 ASTSTTANSGFSFGKPATTSAPGSNTTVTPS 246
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 23.4 bits (48), Expect = 8.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +1
Query: 16 GQLVPQRDGALAAELRKQQNNESLRRQFAE 105
GQLV +D A A NN L QF E
Sbjct: 213 GQLVAPQDIAKALSFLALNNNPKLTGQFVE 242
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 23.4 bits (48), Expect = 8.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 213 FFESAELVFQRALQTHADGCDGVHLPLDPGSDGV 112
++ + + + AL+ D C G+ +DP +GV
Sbjct: 269 YWSTVKPTYGLALECEGDTCSGLPCYVDPRENGV 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,359
Number of Sequences: 5004
Number of extensions: 23037
Number of successful extensions: 90
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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