Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0023_E15
(327 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 130 2e-31
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 130 2e-31
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 57 3e-09
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 0.79
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr... 29 0.79
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p... 29 0.79
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein. 29 0.79
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp... 29 0.79
L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical pr... 29 1.0
L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical pr... 29 1.0
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 29 1.0
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 1.0
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 28 1.4
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 28 1.8
Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical p... 27 2.4
Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical pr... 27 2.4
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden... 27 2.4
U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical pr... 26 7.4
U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical p... 26 7.4
U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical pr... 26 7.4
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z34801-2|CAD82919.1| 884|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z34801-1|CAA84330.1| 860|Caenorhabditis elegans Hypothetical pr... 25 9.7
U41540-2|AAK39230.1| 444|Caenorhabditis elegans Suppressor/enha... 25 9.7
U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protei... 25 9.7
AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin SE... 25 9.7
AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain (... 25 9.7
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 130 bits (314), Expect = 2e-31
Identities = 56/101 (55%), Positives = 79/101 (78%)
Frame = +1
Query: 25 VPQRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRR 204
VP+RD L AEL++QQNNE LR FAEKAN VGPW+ER+++ V AIG+G +G LED +++
Sbjct: 617 VPRRDSQLQAELKRQQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRGRLEDAIQQ 676
Query: 205 LKEYEAGVYAYKPHIEELERIHQAVQEGMIFENRYAKYTME 327
L+ + V YKP+++ELER+HQ +QE +FENR ++Y+ME
Sbjct: 677 LRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSME 717
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 130 bits (314), Expect = 2e-31
Identities = 56/101 (55%), Positives = 79/101 (78%)
Frame = +1
Query: 25 VPQRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRR 204
VP+RD L AEL++QQNNE LR FAEKAN VGPW+ER+++ V AIG+G +G LED +++
Sbjct: 643 VPRRDSQLQAELKRQQNNERLRTIFAEKANQVGPWLERELEQVLAIGLGGRGRLEDAIQQ 702
Query: 205 LKEYEAGVYAYKPHIEELERIHQAVQEGMIFENRYAKYTME 327
L+ + V YKP+++ELER+HQ +QE +FENR ++Y+ME
Sbjct: 703 LRSIQRNVLGYKPNLDELERVHQEMQENFVFENRKSRYSME 743
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 57.2 bits (132), Expect = 3e-09
Identities = 28/101 (27%), Positives = 56/101 (55%)
Frame = +1
Query: 19 QLVPQRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQL 198
+++ +R+ LA E ++Q+ N+ LRR+FA+ ANA W+ + G G+LE+QL
Sbjct: 2144 RIIKEREQELAREHQRQEENDKLRREFAKLANAFHAWLTNTRQEMMEAG----GTLEEQL 2199
Query: 199 RRLKEYEAGVYAYKPHIEELERIHQAVQEGMIFENRYAKYT 321
++ + A K + ++E ++ +I +NRY +++
Sbjct: 2200 DAVERKAKEIKANKGQLRQIEEKGAMLERNLILDNRYTEHS 2240
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/77 (19%), Positives = 35/77 (45%)
Frame = +1
Query: 97 FAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQA 276
F A+ + WI ++ +L+ ++++ + +EA V A+ I L++ A
Sbjct: 66 FKRDADELNVWILEKLQTAQEENFRDPSNLQAKIQKHEAFEAEVQAHAKTIANLDKTGNA 125
Query: 277 VQEGMIFENRYAKYTME 327
+ + F + + K +E
Sbjct: 126 MIQHNHFASEHIKKRLE 142
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.5 bits (63), Expect = 0.60
Identities = 24/99 (24%), Positives = 43/99 (43%)
Frame = +2
Query: 23 WCRSATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSA 202
+C A+ RS + R R+ S +R S P RGR S R+ ++ S
Sbjct: 131 YCAYQRAKQVRSNSQRRRRRSDSQESSKRSA-SPPVRRGRSKSRSRSRSPSRSRSRSRSR 189
Query: 203 DSKNTKQASTRTNHISRNWNASTKPSKRA*SSRIGMRNT 319
+K ++R +SR+ + S S+ ++R R++
Sbjct: 190 SVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSS 228
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.5 bits (63), Expect = 0.60
Identities = 24/99 (24%), Positives = 43/99 (43%)
Frame = +2
Query: 23 WCRSATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSA 202
+C A+ RS + R R+ S +R S P RGR S R+ ++ S
Sbjct: 131 YCAYQRAKQVRSNSQRRRRRSDSQESSKRSA-SPPVRRGRSKSRSRSRSPSRSRSRSRSR 189
Query: 203 DSKNTKQASTRTNHISRNWNASTKPSKRA*SSRIGMRNT 319
+K ++R +SR+ + S S+ ++R R++
Sbjct: 190 SVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSS 228
>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 31 QRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGS-LEDQLRRL 207
+R A+ AEL++Q+ E L ++F +KA W+ + + G S +E L++
Sbjct: 403 ERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSASQVEKTLKKQ 462
Query: 208 KEYEAGVYAYKPHIEEL 258
+ + A + + L
Sbjct: 463 QAISTDILAREDRFKML 479
>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
protein R31.1 protein.
Length = 4063
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 31 QRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGS-LEDQLRRL 207
+R A+ AEL++Q+ E L ++F +KA W+ + + G S +E L++
Sbjct: 403 ERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSASQVEKTLKKQ 462
Query: 208 KEYEAGVYAYKPHIEEL 258
+ + A + + L
Sbjct: 463 QAISTDILAREDRFKML 479
>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
protein 40 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 129 DREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRVQTTYRGTGTHPP 272
D E+ R+ H G L +Q + R+ Q Y GTG H P
Sbjct: 1175 DIESPTPRYHHLQGQGTLTRSYHQSSQSLEGRQRTPQVVYTGTGRHQP 1222
>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
Length = 1415
Score = 29.1 bits (62), Expect = 0.79
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +3
Query: 129 DREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRVQTTYRGTGTHPP 272
D E+ R+ H G L +Q + R+ Q Y GTG H P
Sbjct: 1175 DIESPTPRYHHLQGQGTLTRSYHQSSQSLEGRQRTPQVVYTGTGRHQP 1222
>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
spectrin homolog Sma1 protein.
Length = 4063
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 31 QRDGALAAELRKQQNNESLRRQFAEKANAVGPWIERQMDAVTAIGMGLQGS-LEDQLRRL 207
+R A+ AEL++Q+ E L ++F +KA W+ + + G S +E L++
Sbjct: 403 ERQVAIIAELQRQEKLEQLAQRFHKKAKLRDSWLRSVQVVLEEMEHGRSASQVEKTLKKQ 462
Query: 208 KEYEAGVYAYKPHIEEL 258
+ + A + + L
Sbjct: 463 QAISTDILAREDRFKML 479
>L08403-5|AAT92077.1| 531|Caenorhabditis elegans Hypothetical
protein F42H10.7b protein.
Length = 531
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 41 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 160
+ W R +S R+T SR TP S+G TP P
Sbjct: 461 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 500
>L08403-4|AAA28021.1| 529|Caenorhabditis elegans Hypothetical
protein F42H10.7a protein.
Length = 529
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +2
Query: 41 ARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQP 160
+ W R +S R+T SR TP S+G TP P
Sbjct: 459 SNWSRPSSSKRSTTPGSAWSRGSTTPGSSWSQGAQTPGTP 498
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 WIERQMDAVT-AIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELER 264
W+ RQ D + IGM +Q S D LRR+ E +K + +ER
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRMNSTEWN--KWKTDLANIER 1319
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 WIERQMDAVT-AIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELER 264
W+ RQ D + IGM +Q S D LRR+ E +K + +ER
Sbjct: 1275 WLSRQFDELEDEIGMTIQTSRADDLRRMNSTEWN--KWKTDLANIER 1319
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 72 EQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTQRIRSR 224
E RE E R + +RR R+ GR + R G R +R RSR
Sbjct: 141 ENREKEKQSRDKERRRSRSPRDRRGRATTSRSGRTSSSDRDRHSKRRSRSR 191
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 27.9 bits (59), Expect = 1.8
Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 GTXXXXXXXXXXXXXXXXXXXEQREPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFG 188
GT Q EPE GEGK+R + A+ R++S+ G + G
Sbjct: 410 GTTSKKSIATVTASPEMSSKTTQMEPEQD--GEGKKRPETSKGANERKYSNA-GLEDIVG 466
Query: 189 -RPAPQTQR----IRSRRLRVQTTYRGTGTHPPSR 278
+ +P ++ SR+ T T PPSR
Sbjct: 467 PKSSPHEEKKSSHPSSRKGSKATDENAPATRPPSR 501
>Z81491-12|CAI46569.1| 177|Caenorhabditis elegans Hypothetical
protein D1086.10a protein.
Length = 177
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/83 (21%), Positives = 34/83 (40%)
Frame = +2
Query: 32 SATARWPRSCASSRTTRA*GVSSRRRQTPSDPGSRGRWTPSQPSAWVCRALWKTSSADSK 211
SAT + A + T+ S+ P S+ +PS S+ ++ S+++
Sbjct: 13 SATPTLSFTTAPTGTSPTVDTSAVIAPNPESSPSQSTDSPSTASSTATEQIFTPSTSEPT 72
Query: 212 NTKQASTRTNHISRNWNASTKPS 280
+T + T + WN + PS
Sbjct: 73 STTTTAPGTTELPFEWNVTAPPS 95
>Z66567-5|CAA91492.4| 757|Caenorhabditis elegans Hypothetical
protein ZK455.8a protein.
Length = 757
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = +2
Query: 152 SQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNWNASTKPSKRA*SSRIGMRNTRW 325
S P R L +S + N AS + S N S KPSK S + +RN +
Sbjct: 77 SNPEFTTVRFLTPQASVQTVNAGAASVAPSEASVNAENSRKPSKARLQSEMEIRNQHY 134
>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
of males (increasedx chromosome loss) protein 1, isoform
a protein.
Length = 1281
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 94 QFAEKANAVGPWIERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELE 261
Q ++A ++R++ + G + SL +LRR KE++ V A + + +E
Sbjct: 387 QLKDQAQRESAMVQRELLMAEQVFEGDKSSLNHELRRQKEHQERVKAKEGDVRRIE 442
>U97192-1|AAB52434.2| 986|Caenorhabditis elegans Hypothetical
protein C01F4.2a protein.
Length = 986
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +3
Query: 135 EADGRRHSHRHGSAGLFGRPAPQTQRIRSR-RLRVQTTYRG------TGTH-PPSRPRG 287
E D HRHG GR +P + + + +++VQ+ G T T PSRP G
Sbjct: 769 EEDSSPRHHRHGDHSHIGRQSPLARELTTNGKVKVQSQRSGSWPFSLTKTQTSPSRPEG 827
>Z75714-6|CAE54930.1| 532|Caenorhabditis elegans Hypothetical
protein ZC434.9b protein.
Length = 532
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 135 EADGRRHSHRHGSAGLFGRPAPQTQRIRS 221
E G R+SHR A + RP P Q RS
Sbjct: 464 EQAGSRNSHRSQVANVAQRPGPPQQASRS 492
>U80441-11|AAB37660.3| 1037|Caenorhabditis elegans Hypothetical
protein F27C1.11 protein.
Length = 1037
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/65 (21%), Positives = 29/65 (44%)
Frame = +1
Query: 133 ERQMDAVTAIGMGLQGSLEDQLRRLKEYEAGVYAYKPHIEELERIHQAVQEGMIFENRYA 312
+ + D IG + L + +++ G K H++ L+ + QE + +E ++
Sbjct: 534 DEEEDPYRDIGTAERERLGEAATKIQAAYKGYTVRKKHVQFLKEKERKEQEILDYEKQFI 593
Query: 313 KYTME 327
YT E
Sbjct: 594 HYTFE 598
>U12964-6|AAM29681.1| 329|Caenorhabditis elegans Hypothetical
protein F26F4.8 protein.
Length = 329
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 279 DGLVDAFQFLDMWFVRVDACFVFFESAELVFQRALQTHADGCD 151
D L++ + F D F R D +FF + + + + L A+GCD
Sbjct: 75 DKLLECY-FCDKMFNRTDT--LFFHALDHISKGTLPCRAEGCD 114
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical
protein F54E4.1 protein.
Length = 2948
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +3
Query: 81 EPEASVRGEGKRRRTLDREADGRRHSHRHGSAGLFGRPAPQTQRIRSRRLRV 236
EPE S E +++R + E HS + G AP ++ I +L +
Sbjct: 459 EPEDSSPTESEKKRDFEHENVRSEHSDATRTGGSVSSDAPSSKDILDVKLEI 510
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 186 QRALQTHADGCDGVHLPLDPGSDGVCLLREL 94
QR L HAD C +LP PG+ + + L
Sbjct: 39 QRFLTIHADTCRPGNLPARPGTLNIIFKKNL 69
>Z34801-2|CAD82919.1| 884|Caenorhabditis elegans Hypothetical
protein F59A2.1b protein.
Length = 884
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +2
Query: 116 PSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNWNASTKPS 280
P + G ++ P +P +W C + T AD T + + N +KPS
Sbjct: 448 PEETGFGDQFKP-KPGSWECPGCYVTCKADEIECACCGTSKDGSVKEKNIFSKPS 501
>Z34801-1|CAA84330.1| 860|Caenorhabditis elegans Hypothetical
protein F59A2.1a protein.
Length = 860
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +2
Query: 116 PSDPGSRGRWTPSQPSAWVCRALWKTSSADSKNTKQASTRTNHISRNWNASTKPS 280
P + G ++ P +P +W C + T AD T + + N +KPS
Sbjct: 424 PEETGFGDQFKP-KPGSWECPGCYVTCKADEIECACCGTSKDGSVKEKNIFSKPS 477
>U41540-2|AAK39230.1| 444|Caenorhabditis elegans
Suppressor/enhancer of lin-12 protein12 protein.
Length = 444
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 311 AYLFSKIMPSWTAWWMRSSSSICGLYA 231
A +F K +P WT W++ S+ L A
Sbjct: 203 ALVFIKYLPEWTVWFVLFVISVWDLVA 229
>U35660-1|AAA85511.1| 461|Caenorhabditis elegans membrane protein
protein.
Length = 461
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 311 AYLFSKIMPSWTAWWMRSSSSICGLYA 231
A +F K +P WT W++ S+ L A
Sbjct: 203 ALVFIKYLPEWTVWFVLFVISVWDLVA 229
>AF171064-1|AAD50991.1| 444|Caenorhabditis elegans presenilin
SEL-12 protein.
Length = 444
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 311 AYLFSKIMPSWTAWWMRSSSSICGLYA 231
A +F K +P WT W++ S+ L A
Sbjct: 203 ALVFIKYLPEWTVWFVLFVISVWDLVA 229
>AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 28 protein.
Length = 494
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +1
Query: 181 SLEDQLRRLKEYEAG--VYAYKPHIEELERIHQAVQ 282
SL+D+ +EYEAG ++ + + + L H+A++
Sbjct: 17 SLDDKTEAQREYEAGNALFVNRQYSDALTHYHKAIE 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.131 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,454,344
Number of Sequences: 27780
Number of extensions: 147140
Number of successful extensions: 639
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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