Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E15
         (327 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.31 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.54 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   2.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   3.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   8.8  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    20   8.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   8.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 230 TRTNHISRNWNASTKPSKR 286
           T+TN ISR +NAS   +KR
Sbjct: 741 TKTNRISRIFNASKHSAKR 759


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 0.54
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 113  TPSDPGSRGRWTPSQPS 163
            T   P  RGR+TP QP+
Sbjct: 987  TDPSPFKRGRYTPPQPA 1003


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 RRHSHRHGSAGLFGRPAPQTQRIRS 221
           +RHS  H S G + R A + Q +RS
Sbjct: 195 QRHSTIHLSTGNYSRLACEIQFVRS 219


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 219 SRRLRVQTTYRGTGTHPPSRP 281
           +R L+    ++GT TH  SRP
Sbjct: 102 ARILKTIENFKGTVTHVESRP 122


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 211 EYEAGVYAYKPHIEE 255
           EY+  +  YKP +EE
Sbjct: 171 EYKPEIMEYKPDVEE 185


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 265 IHQAVQEGMIFENR 306
           + QA+Q G+++EN+
Sbjct: 187 VPQAIQFGVVYENK 200


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 252  GTGTHPPSRPRGHD 293
            G+   PP  PR HD
Sbjct: 1855 GSPEPPPPPPRNHD 1868


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 111 KRRRTLDREADGRRHSHRHGSAGLFGRPAPQ 203
           +R  TL R +DG + + R+  +  +    PQ
Sbjct: 84  RRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQ 114


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 111 KRRRTLDREADGRRHSHRHGSAGLFGRPAPQ 203
           +R  TL R +DG + + R+  +  +    PQ
Sbjct: 532 RRTNTLRRGSDGSQLAMRNDRSPSYSMQVPQ 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,718
Number of Sequences: 438
Number of extensions: 1866
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7217694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)