Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E13
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    53   4e-09
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    47   4e-07
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    25   1.0  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   2.4  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   7.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    23   7.2  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 53.2 bits (122), Expect = 4e-09
 Identities = 25/43 (58%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNP-ENVEFKVRCSRFL 147
           +PR+I DIK FL  AR KDA S +IKKN  ++V+FK+RCS++L
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYL 43


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 46.8 bits (106), Expect = 4e-07
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNPEN-VEFKVRCSRFL 147
           +PR++ DIK FL  A   DA S ++KKN    V+FK+RCSR+L
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYL 43


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 143 NREQRTLNSTFSGFFFIFTDLASFIRAVNKKSLIS 39
           N+  R LNS  +  F      AS + A NKKS IS
Sbjct: 56  NQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 7   LHTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPENVEF 123
           ++ SS  +      D+L T+  K+AK+V+I+     VEF
Sbjct: 152 VNRSSFQKSSCAYTDYLYTSNSKEAKTVRIRFQLFLVEF 190


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 112 SQGSSLSLPTWHLSY 68
           S+G  L +PTW ++Y
Sbjct: 257 SKGEQLIVPTWDMAY 271


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 149 YRNREQRTLNSTFSGFFFIFTDLASF 72
           Y  +  R  N   +GFFF+   + SF
Sbjct: 350 YMKKTGRYRNLVIAGFFFMLMGIVSF 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,253
Number of Sequences: 5004
Number of extensions: 5851
Number of successful extensions: 25
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)