Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0023_E13
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     63   3e-11
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    62   5e-11
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     62   8e-11
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847...    25   8.4  
01_01_1082 - 8516525-8517409                                           25   8.4  

>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 27/42 (64%), Positives = 38/42 (90%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSRFL 147
           +P++I +IKDFLLTAR KDA+SV+IK++ + V+FKVRCSR+L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYL 42


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 30/49 (61%), Positives = 40/49 (81%)
 Frame = +1

Query: 1   ATLHTSSVPREIXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSRFL 147
           ATL T   P++I +IKDFLLTAR KDA+SV+IK+  + V+FKVRCS++L
Sbjct: 26  ATLATQ--PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYL 72


>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 26/42 (61%), Positives = 37/42 (88%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSRFL 147
           +P++I +IKDFLLTAR KDA+SV+IK+  + V+FKVRCS++L
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYL 42


>01_05_0592 -
           23483834-23484285,23484357-23484455,23484534-23484702,
           23485049-23485363,23485561-23485767,23485852-23486106,
           23486575-23486736
          Length = 552

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 22  VPREIXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSR 141
           +  ++  IK+   TA   D K+   +++PE++EFK+   R
Sbjct: 70  IKSQLAPIKERSRTAFEFDGKNDPNREDPESLEFKIMKER 109


>01_01_1082 - 8516525-8517409
          Length = 294

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 34  IXDIKDFLLTARMKDAKSVKIKKNPENVEFKVRCSR 141
           +  IK+   TA   D KS   +++PE++EFK+   R
Sbjct: 229 LAPIKERSRTAFEFDGKSDPKREDPESLEFKIMKDR 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,943
Number of Sequences: 37544
Number of extensions: 33533
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 14,793,348
effective HSP length: 30
effective length of database: 13,667,028
effective search space used: 259673532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)